Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AC139426.1-201ENST00000568218 2529 ntBASIC26.72■■□□□ 1.87
CPNE1Q99829 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.71■■□□□ 1.87
CPNE1Q99829 AL135925.1-201ENST00000605920 1701 ntBASIC26.7■■□□□ 1.87
CPNE1Q99829 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
CPNE1Q99829 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
CPNE1Q99829 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.69■■□□□ 1.86
CPNE1Q99829 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
CPNE1Q99829 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CPNE1Q99829 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CPNE1Q99829 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.66■■□□□ 1.86
CPNE1Q99829 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CPNE1Q99829 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CPNE1Q99829 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.65■■□□□ 1.86
CPNE1Q99829 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CPNE1Q99829 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.65■■□□□ 1.86
CPNE1Q99829 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CPNE1Q99829 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.64■■□□□ 1.86
CPNE1Q99829 WASH5P-204ENST00000632292 975 ntBASIC26.64■■□□□ 1.86
CPNE1Q99829 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CPNE1Q99829 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CPNE1Q99829 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
CPNE1Q99829 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
CPNE1Q99829 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CPNE1Q99829 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CPNE1Q99829 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
CPNE1Q99829 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.59■■□□□ 1.85
CPNE1Q99829 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CPNE1Q99829 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CPNE1Q99829 AL133380.1-201ENST00000506013 324 ntBASIC26.57■■□□□ 1.84
CPNE1Q99829 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.57■■□□□ 1.84
CPNE1Q99829 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
CPNE1Q99829 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.56■■□□□ 1.84
CPNE1Q99829 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.56■■□□□ 1.84
CPNE1Q99829 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CPNE1Q99829 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CPNE1Q99829 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CPNE1Q99829 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
CPNE1Q99829 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.55■■□□□ 1.84
CPNE1Q99829 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
CPNE1Q99829 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CPNE1Q99829 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.54■■□□□ 1.84
CPNE1Q99829 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPNE1Q99829 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPNE1Q99829 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.53■■□□□ 1.84
CPNE1Q99829 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPNE1Q99829 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CPNE1Q99829 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CPNE1Q99829 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CPNE1Q99829 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.48■■□□□ 1.83
CPNE1Q99829 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CPNE1Q99829 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CPNE1Q99829 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.47■■□□□ 1.83
CPNE1Q99829 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
CPNE1Q99829 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.46■■□□□ 1.83
CPNE1Q99829 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CPNE1Q99829 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CPNE1Q99829 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CPNE1Q99829 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CPNE1Q99829 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CPNE1Q99829 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CPNE1Q99829 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CPNE1Q99829 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
CPNE1Q99829 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CPNE1Q99829 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CPNE1Q99829 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CPNE1Q99829 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CPNE1Q99829 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CPNE1Q99829 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.37■■□□□ 1.81
CPNE1Q99829 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.36■■□□□ 1.81
CPNE1Q99829 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CPNE1Q99829 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CPNE1Q99829 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
CPNE1Q99829 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
CPNE1Q99829 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CPNE1Q99829 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CPNE1Q99829 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CPNE1Q99829 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CPNE1Q99829 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
CPNE1Q99829 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CPNE1Q99829 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.32■■□□□ 1.8
CPNE1Q99829 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.31■■□□□ 1.8
CPNE1Q99829 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CPNE1Q99829 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPNE1Q99829 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CPNE1Q99829 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CPNE1Q99829 AL139393.2-201ENST00000608721 2025 ntBASIC26.3■■□□□ 1.8
CPNE1Q99829 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPNE1Q99829 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CPNE1Q99829 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CPNE1Q99829 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CPNE1Q99829 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.28■■□□□ 1.8
CPNE1Q99829 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CPNE1Q99829 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.28■■□□□ 1.8
CPNE1Q99829 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPNE1Q99829 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CPNE1Q99829 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPNE1Q99829 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPNE1Q99829 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPNE1Q99829 AC010864.1-201ENST00000609407 1511 ntBASIC26.26■■□□□ 1.79
CPNE1Q99829 RARRES2P7-201ENST00000567349 469 ntBASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms