Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
DEPDC4Q8N2C3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DEPDC4Q8N2C3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
DEPDC4Q8N2C3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
DEPDC4Q8N2C3 RARRES2P7-201ENST00000567349 469 ntBASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DEPDC4Q8N2C3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DEPDC4Q8N2C3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.49■■□□□ 1.51
DEPDC4Q8N2C3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
DEPDC4Q8N2C3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
DEPDC4Q8N2C3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.45■■□□□ 1.5
DEPDC4Q8N2C3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
DEPDC4Q8N2C3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
DEPDC4Q8N2C3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.38■■□□□ 1.49
DEPDC4Q8N2C3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DEPDC4Q8N2C3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DEPDC4Q8N2C3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 AC142086.6-201ENST00000621154 1765 ntBASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
DEPDC4Q8N2C3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DEPDC4Q8N2C3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
DEPDC4Q8N2C3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DEPDC4Q8N2C3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DEPDC4Q8N2C3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC24.29■■□□□ 1.48
DEPDC4Q8N2C3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 SETD8P1-201ENST00000623146 1180 ntBASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DEPDC4Q8N2C3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 AL135925.1-201ENST00000605920 1701 ntBASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 AC097358.2-201ENST00000607541 1159 ntBASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
DEPDC4Q8N2C3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms