Protein–RNA interactions for Protein: A0A0K0K1C4

TRBV27, T-cell receptor beta variable 27 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV27A0A0K0K1C4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRBV27A0A0K0K1C4 AL135925.1-201ENST00000605920 1701 ntBASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 AC142086.6-201ENST00000621154 1765 ntBASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC18.88■□□□□ 0.61
TRBV27A0A0K0K1C4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRBV27A0A0K0K1C4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
TRBV27A0A0K0K1C4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
TRBV27A0A0K0K1C4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRBV27A0A0K0K1C4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRBV27A0A0K0K1C4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRBV27A0A0K0K1C4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRBV27A0A0K0K1C4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
TRBV27A0A0K0K1C4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.83■□□□□ 0.6
TRBV27A0A0K0K1C4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRBV27A0A0K0K1C4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRBV27A0A0K0K1C4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRBV27A0A0K0K1C4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRBV27A0A0K0K1C4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRBV27A0A0K0K1C4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.8■□□□□ 0.6
TRBV27A0A0K0K1C4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC18.8■□□□□ 0.6
TRBV27A0A0K0K1C4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRBV27A0A0K0K1C4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRBV27A0A0K0K1C4 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRBV27A0A0K0K1C4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRBV27A0A0K0K1C4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC18.79■□□□□ 0.6
TRBV27A0A0K0K1C4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRBV27A0A0K0K1C4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TRBV27A0A0K0K1C4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRBV27A0A0K0K1C4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRBV27A0A0K0K1C4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRBV27A0A0K0K1C4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRBV27A0A0K0K1C4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRBV27A0A0K0K1C4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRBV27A0A0K0K1C4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRBV27A0A0K0K1C4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRBV27A0A0K0K1C4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRBV27A0A0K0K1C4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRBV27A0A0K0K1C4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TRBV27A0A0K0K1C4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TRBV27A0A0K0K1C4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC18.76■□□□□ 0.59
TRBV27A0A0K0K1C4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRBV27A0A0K0K1C4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRBV27A0A0K0K1C4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRBV27A0A0K0K1C4 ZNRF2P1-201ENST00000441407 443 ntBASIC18.74■□□□□ 0.59
TRBV27A0A0K0K1C4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRBV27A0A0K0K1C4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRBV27A0A0K0K1C4 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRBV27A0A0K0K1C4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRBV27A0A0K0K1C4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRBV27A0A0K0K1C4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRBV27A0A0K0K1C4 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.59
TRBV27A0A0K0K1C4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRBV27A0A0K0K1C4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRBV27A0A0K0K1C4 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRBV27A0A0K0K1C4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC18.69■□□□□ 0.58
TRBV27A0A0K0K1C4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRBV27A0A0K0K1C4 DYNLL1-208ENST00000550178 581 ntBASIC18.69■□□□□ 0.58
TRBV27A0A0K0K1C4 AL139393.2-201ENST00000608721 2025 ntBASIC18.69■□□□□ 0.58
TRBV27A0A0K0K1C4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
TRBV27A0A0K0K1C4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRBV27A0A0K0K1C4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRBV27A0A0K0K1C4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRBV27A0A0K0K1C4 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRBV27A0A0K0K1C4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC18.67■□□□□ 0.58
TRBV27A0A0K0K1C4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRBV27A0A0K0K1C4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRBV27A0A0K0K1C4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRBV27A0A0K0K1C4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRBV27A0A0K0K1C4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRBV27A0A0K0K1C4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TRBV27A0A0K0K1C4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRBV27A0A0K0K1C4 DRD5P2-201ENST00000421395 2012 ntBASIC18.62■□□□□ 0.57
TRBV27A0A0K0K1C4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRBV27A0A0K0K1C4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRBV27A0A0K0K1C4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRBV27A0A0K0K1C4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRBV27A0A0K0K1C4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRBV27A0A0K0K1C4 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRBV27A0A0K0K1C4 AL031258.1-201ENST00000623562 325 ntBASIC18.59■□□□□ 0.57
TRBV27A0A0K0K1C4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRBV27A0A0K0K1C4 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRBV27A0A0K0K1C4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.58■□□□□ 0.56
TRBV27A0A0K0K1C4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRBV27A0A0K0K1C4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRBV27A0A0K0K1C4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms