RNA–Protein interactions for RNA: ENST00000278833.3

ROM1-201, Transcript of retinal outer segment membrane protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ROM1, Length 1,878 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1-201ENST00000278833 NISCHQ9Y2I1 1504 aa53.23■■■■■ 6.11
ROM1-201ENST00000278833 CCDC180Q9P1Z9 1646 aa46.82■■■■■ 5.09
ROM1-201ENST00000278833 ABCC9O60706 1549 aa45.49■■■■■ 4.87
ROM1-201ENST00000278833 ZCCHC6Q5VYS8 1495 aaKnown RBP45.09■■■■■ 4.81
ROM1-201ENST00000278833 SHROOM4Q9ULL8 1493 aa44.27■■■■■ 4.68
ROM1-201ENST00000278833 DCAF8L2P0C7V8 631 aa44.2■■■■■ 4.67
ROM1-201ENST00000278833 DCAF1Q9Y4B6 1507 aa44.12■■■■■ 4.65
ROM1-201ENST00000278833 NACADO15069 1562 aa43.94■■■■■ 4.63
ROM1-201ENST00000278833 RB1CC1Q8TDY2 1594 aa43.88■■■■■ 4.61
ROM1-201ENST00000278833 MYO15BQ96JP2 1530 aa43.81■■■■■ 4.6
ROM1-201ENST00000278833 SUPT5HO00267 1087 aaKnown RBP43.3■■■■■ 4.52
ROM1-201ENST00000278833 UNC13AQ9UPW8 1703 aa42.93■■■■■ 4.46
ROM1-201ENST00000278833 SCRIBQ14160 1630 aa42.84■■■■■ 4.45
ROM1-201ENST00000278833 PABPN1Q86U42 306 aaKnown RBP eCLIP42.64■■■■■ 4.42
ROM1-201ENST00000278833 BICRAQ9NZM4 1560 aa42.58■■■■■ 4.41
ROM1-201ENST00000278833 CHIC1Q5VXU3 224 aa42.4■■■■■ 4.38
ROM1-201ENST00000278833 RSF1Q96T23 1441 aaPredicted RBP41.85■■■■■ 4.29
ROM1-201ENST00000278833 EIF4G1Q04637 1599 aaKnown RBP41.41■■■■■ 4.22
ROM1-201ENST00000278833 DNAJC5BQ9UF47 199 aa41.41■■■■■ 4.22
ROM1-201ENST00000278833 CECR2Q9BXF3 1484 aa41.29■■■■■ 4.2
ROM1-201ENST00000278833 MROH2BQ7Z745 1585 aa41.17■■■■■ 4.18
ROM1-201ENST00000278833 CC2D2AQ9P2K1 1620 aa41.14■■■■■ 4.18
ROM1-201ENST00000278833 BAZ1AQ9NRL2 1556 aaPredicted RBP41.01■■■■■ 4.16
ROM1-201ENST00000278833 SMARCA4P51532 1647 aa41■■■■■ 4.15
ROM1-201ENST00000278833 WIZO95785 1651 aa40.93■■■■■ 4.14
ROM1-201ENST00000278833 LOC105371045A0A1W2PR82 267 aa40.73■■■■■ 4.11
ROM1-201ENST00000278833 HRCP23327 699 aa40.7■■■■■ 4.11
ROM1-201ENST00000278833 ATAD2BQ9ULI0 1458 aa40.69■■■■■ 4.1
ROM1-201ENST00000278833 TRIM41Q8WV44 630 aa40.64■■■■■ 4.1
ROM1-201ENST00000278833 SMARCA2P51531 1590 aa40.61■■■■■ 4.09
ROM1-201ENST00000278833 NCAPD3P42695 1498 aa40.58■■■■■ 4.09
ROM1-201ENST00000278833 TOP2AP11388 1531 aaKnown RBP40.58■■■■■ 4.09
ROM1-201ENST00000278833 PEG3Q9GZU2 1588 aa40.58■■■■■ 4.09
ROM1-201ENST00000278833 PCGF6Q9BYE7 350 aa40.47■■■■■ 4.07
ROM1-201ENST00000278833 HMGXB3Q12766 1538 aa40.38■■■■■ 4.06
ROM1-201ENST00000278833 BAZ1BQ9UIG0 1483 aaKnown RBP40.36■■■■■ 4.05
ROM1-201ENST00000278833 TRIM26Q12899 539 aaPredicted RBP40.18■■■■■ 4.02
ROM1-201ENST00000278833 CCDC88BA6NC98 1476 aa40.12■■■■■ 4.01
ROM1-201ENST00000278833 FAM9AQ8IZU1 332 aaPredicted RBP39.86■■■■□ 3.97
ROM1-201ENST00000278833 ABCC8Q09428 1581 aa39.77■■■■□ 3.96
ROM1-201ENST00000278833 EEA1Q15075 1411 aa39.63■■■■□ 3.94
ROM1-201ENST00000278833 NESP48681 1621 aa39.52■■■■□ 3.92
ROM1-201ENST00000278833 CADPSQ9ULU8 1353 aa39.45■■■■□ 3.91
ROM1-201ENST00000278833 ZEB1P37275 1124 aaPredicted RBP39.41■■■■□ 3.9
ROM1-201ENST00000278833 LAMC3Q9Y6N6 1575 aa39.4■■■■□ 3.9
ROM1-201ENST00000278833 WRNQ14191 1432 aaPredicted RBP eCLIP39.38■■■■□ 3.9
ROM1-201ENST00000278833 PPARGC1BQ86YN6 1023 aaKnown RBP39.37■■■■□ 3.89
ROM1-201ENST00000278833 CFTRP13569 1480 aa39.3■■■■□ 3.88
ROM1-201ENST00000278833 SOGA1O94964 1423 aa39.3■■■■□ 3.88
ROM1-201ENST00000278833 TNIKQ9UKE5 1360 aa39.28■■■■□ 3.88
ROM1-201ENST00000278833 SYNJ1O43426 1573 aa39.18■■■■□ 3.86
ROM1-201ENST00000278833 CEP162Q5TB80 1403 aa39.16■■■■□ 3.86
ROM1-201ENST00000278833 EHMT2Q96KQ7 1210 aa39.15■■■■□ 3.86
ROM1-201ENST00000278833 PDS5BQ9NTI5 1447 aa39.15■■■■□ 3.86
ROM1-201ENST00000278833 ERCC6Q03468 1493 aa39.14■■■■□ 3.86
ROM1-201ENST00000278833 GOLGA3Q08378 1498 aa39.12■■■■□ 3.85
ROM1-201ENST00000278833 CSRNP3Q8WYN3 585 aa39.1■■■■□ 3.85
ROM1-201ENST00000278833 KIF21BO75037 1637 aa39.1■■■■□ 3.85
ROM1-201ENST00000278833 RUSC2Q8N2Y8 1516 aa39.07■■■■□ 3.85
ROM1-201ENST00000278833 KIF21AQ7Z4S6 1674 aa39.01■■■■□ 3.83
ROM1-201ENST00000278833 FANCD2Q9BXW9 1451 aa38.98■■■■□ 3.83
ROM1-201ENST00000278833 CEP164Q9UPV0 1460 aa38.97■■■■□ 3.83
ROM1-201ENST00000278833 PRDM2Q13029 1718 aa38.96■■■■□ 3.83
ROM1-201ENST00000278833 TOP2BQ02880 1626 aa38.92■■■■□ 3.82
ROM1-201ENST00000278833 BIVM-ERCC5R4GMW8 1640 aa38.91■■■■□ 3.82
ROM1-201ENST00000278833 THOC2Q8NI27 1593 aaKnown RBP38.74■■■■□ 3.79
ROM1-201ENST00000278833 MRC2Q9UBG0 1479 aa38.71■■■■□ 3.79
ROM1-201ENST00000278833 UBTFP17480 764 aaKnown RBP38.63■■■■□ 3.77
ROM1-201ENST00000278833 URB2Q14146 1524 aaKnown RBP38.57■■■■□ 3.77
ROM1-201ENST00000278833 WDR62O43379 1518 aa38.56■■■■□ 3.76
ROM1-201ENST00000278833 ERICH3Q5RHP9 1530 aa38.54■■■■□ 3.76
ROM1-201ENST00000278833 CUX2O14529 1486 aa38.51■■■■□ 3.75
ROM1-201ENST00000278833 CLIP1P30622 1438 aa38.49■■■■□ 3.75
ROM1-201ENST00000278833 RAPGEF2Q9Y4G8 1499 aa38.46■■■■□ 3.75
ROM1-201ENST00000278833 VPS8Q8N3P4 1428 aa38.43■■■■□ 3.74
ROM1-201ENST00000278833 CUX1P39880 1505 aa38.42■■■■□ 3.74
ROM1-201ENST00000278833 TOPBP1Q92547 1522 aa38.41■■■■□ 3.74
ROM1-201ENST00000278833 PRXQ9BXM0 1461 aa38.39■■■■□ 3.74
ROM1-201ENST00000278833 DNMBPQ6XZF7 1577 aa38.37■■■■□ 3.73
ROM1-201ENST00000278833 CCER1Q8TC90 406 aaPredicted RBP38.24■■■■□ 3.71
ROM1-201ENST00000278833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.22■■■■□ 3.71
ROM1-201ENST00000278833 KIF27Q86VH2 1401 aa38.17■■■■□ 3.7
ROM1-201ENST00000278833 POLA1P09884 1462 aaPredicted RBP38.13■■■■□ 3.69
ROM1-201ENST00000278833 FGD5Q6ZNL6 1462 aa38.1■■■■□ 3.69
ROM1-201ENST00000278833 IFT140Q96RY7 1462 aa38.02■■■■□ 3.68
ROM1-201ENST00000278833 ARAP1Q96P48 1450 aa38.01■■■■□ 3.68
ROM1-201ENST00000278833 RAD54L2Q9Y4B4 1467 aa37.99■■■■□ 3.67
ROM1-201ENST00000278833 TARBP1Q13395 1621 aaKnown RBP37.95■■■■□ 3.66
ROM1-201ENST00000278833 TTBK1Q5TCY1 1321 aaPredicted RBP37.94■■■■□ 3.66
ROM1-201ENST00000278833 ZNF608Q9ULD9 1512 aaPredicted RBP37.88■■■■□ 3.65
ROM1-201ENST00000278833 APLP2Q06481 763 aa37.85■■■■□ 3.65
ROM1-201ENST00000278833 TDRD9Q8NDG6 1382 aaKnown RBP37.76■■■■□ 3.63
ROM1-201ENST00000278833 AQRO60306 1485 aaKnown RBP eCLIP37.74■■■■□ 3.63
ROM1-201ENST00000278833 ABCA10Q8WWZ4 1543 aa37.73■■■■□ 3.63
ROM1-201ENST00000278833 WDR97A6NE52 1622 aa37.71■■■■□ 3.63
ROM1-201ENST00000278833 ARHGAP35Q9NRY4 1499 aa37.7■■■■□ 3.63
ROM1-201ENST00000278833 EIF4G3O43432 1585 aaKnown RBP37.7■■■■□ 3.63
ROM1-201ENST00000278833 IGF1RP08069 1367 aa37.67■■■■□ 3.62
ROM1-201ENST00000278833 MAP3K1Q13233 1512 aa37.6■■■■□ 3.61
ROM1-201ENST00000278833 RRBP1Q9P2E9 1410 aaKnown RBP37.59■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms