RNA–Protein interactions for RNA: ENST00000392811.6

SMARCD3-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 2,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-203ENST00000392811 NISCHQ9Y2I1 1504 aa55.46■■■■■ 6.47
SMARCD3-203ENST00000392811 CCDC180Q9P1Z9 1646 aa47.73■■■■■ 5.23
SMARCD3-203ENST00000392811 ZCCHC6Q5VYS8 1495 aaKnown RBP46.78■■■■■ 5.08
SMARCD3-203ENST00000392811 SHROOM4Q9ULL8 1493 aa46.29■■■■■ 5
SMARCD3-203ENST00000392811 DCAF8L2P0C7V8 631 aa45.75■■■■■ 4.91
SMARCD3-203ENST00000392811 DCAF1Q9Y4B6 1507 aa45.7■■■■■ 4.91
SMARCD3-203ENST00000392811 SUPT5HO00267 1087 aaKnown RBP45.02■■■■■ 4.8
SMARCD3-203ENST00000392811 MYO15BQ96JP2 1530 aa44.71■■■■■ 4.75
SMARCD3-203ENST00000392811 ABCC9O60706 1549 aa44.5■■■■■ 4.71
SMARCD3-203ENST00000392811 SCRIBQ14160 1630 aa44.3■■■■■ 4.68
SMARCD3-203ENST00000392811 NACADO15069 1562 aa44.24■■■■■ 4.67
SMARCD3-203ENST00000392811 RB1CC1Q8TDY2 1594 aa43.65■■■■■ 4.58
SMARCD3-203ENST00000392811 CHIC1Q5VXU3 224 aa43.55■■■■■ 4.56
SMARCD3-203ENST00000392811 RSF1Q96T23 1441 aaPredicted RBP43.49■■■■■ 4.55
SMARCD3-203ENST00000392811 CECR2Q9BXF3 1484 aa43.16■■■■■ 4.5
SMARCD3-203ENST00000392811 MROH2BQ7Z745 1585 aa42.98■■■■■ 4.47
SMARCD3-203ENST00000392811 UNC13AQ9UPW8 1703 aa42.94■■■■■ 4.46
SMARCD3-203ENST00000392811 WIZO95785 1651 aa42.71■■■■■ 4.43
SMARCD3-203ENST00000392811 BAZ1AQ9NRL2 1556 aaPredicted RBP42.69■■■■■ 4.42
SMARCD3-203ENST00000392811 BICRAQ9NZM4 1560 aa42.43■■■■■ 4.38
SMARCD3-203ENST00000392811 SMARCA4P51532 1647 aa42.42■■■■■ 4.38
SMARCD3-203ENST00000392811 PABPN1Q86U42 306 aaKnown RBP eCLIP42.27■■■■■ 4.36
SMARCD3-203ENST00000392811 TOP2AP11388 1531 aaKnown RBP42.16■■■■■ 4.34
SMARCD3-203ENST00000392811 TRIM41Q8WV44 630 aa42.13■■■■■ 4.33
SMARCD3-203ENST00000392811 LOC105371045A0A1W2PR82 267 aa42.06■■■■■ 4.32
SMARCD3-203ENST00000392811 EIF4G1Q04637 1599 aaKnown RBP41.93■■■■■ 4.3
SMARCD3-203ENST00000392811 SMARCA2P51531 1590 aa41.86■■■■■ 4.29
SMARCD3-203ENST00000392811 CCDC88BA6NC98 1476 aa41.84■■■■■ 4.29
SMARCD3-203ENST00000392811 PEG3Q9GZU2 1588 aa41.75■■■■■ 4.27
SMARCD3-203ENST00000392811 FAM9AQ8IZU1 332 aaPredicted RBP41.57■■■■■ 4.24
SMARCD3-203ENST00000392811 ATAD2BQ9ULI0 1458 aa41.48■■■■■ 4.23
SMARCD3-203ENST00000392811 ABCC8Q09428 1581 aa41.39■■■■■ 4.22
SMARCD3-203ENST00000392811 BAZ1BQ9UIG0 1483 aaKnown RBP41.3■■■■■ 4.2
SMARCD3-203ENST00000392811 PCGF6Q9BYE7 350 aa41.22■■■■■ 4.19
SMARCD3-203ENST00000392811 EHMT2Q96KQ7 1210 aa41.08■■■■■ 4.17
SMARCD3-203ENST00000392811 WRNQ14191 1432 aaPredicted RBP eCLIP40.88■■■■■ 4.14
SMARCD3-203ENST00000392811 NCAPD3P42695 1498 aa40.87■■■■■ 4.13
SMARCD3-203ENST00000392811 HMGXB3Q12766 1538 aa40.87■■■■■ 4.13
SMARCD3-203ENST00000392811 SOGA1O94964 1423 aa40.83■■■■■ 4.13
SMARCD3-203ENST00000392811 TRIM26Q12899 539 aaPredicted RBP40.8■■■■■ 4.12
SMARCD3-203ENST00000392811 HRCP23327 699 aa40.79■■■■■ 4.12
SMARCD3-203ENST00000392811 SYNJ1O43426 1573 aa40.73■■■■■ 4.11
SMARCD3-203ENST00000392811 EEA1Q15075 1411 aa40.71■■■■■ 4.11
SMARCD3-203ENST00000392811 RUSC2Q8N2Y8 1516 aa40.65■■■■■ 4.1
SMARCD3-203ENST00000392811 CSRNP3Q8WYN3 585 aa40.55■■■■■ 4.08
SMARCD3-203ENST00000392811 TOP2BQ02880 1626 aa40.39■■■■■ 4.06
SMARCD3-203ENST00000392811 TNIKQ9UKE5 1360 aa40.38■■■■■ 4.06
SMARCD3-203ENST00000392811 CEP162Q5TB80 1403 aa40.32■■■■■ 4.04
SMARCD3-203ENST00000392811 GOLGA3Q08378 1498 aa40.31■■■■■ 4.04
SMARCD3-203ENST00000392811 BIVM-ERCC5R4GMW8 1640 aa40.3■■■■■ 4.04
SMARCD3-203ENST00000392811 CFTRP13569 1480 aa40.29■■■■■ 4.04
SMARCD3-203ENST00000392811 UBTFP17480 764 aaKnown RBP40.21■■■■■ 4.03
SMARCD3-203ENST00000392811 CC2D2AQ9P2K1 1620 aa40.21■■■■■ 4.03
SMARCD3-203ENST00000392811 KIF21BO75037 1637 aa40.2■■■■■ 4.03
SMARCD3-203ENST00000392811 CEP164Q9UPV0 1460 aa40.18■■■■■ 4.02
SMARCD3-203ENST00000392811 CUX1P39880 1505 aa40.1■■■■■ 4.01
SMARCD3-203ENST00000392811 PPARGC1BQ86YN6 1023 aaKnown RBP40.09■■■■■ 4.01
SMARCD3-203ENST00000392811 PRDM2Q13029 1718 aa40.08■■■■■ 4.01
SMARCD3-203ENST00000392811 CADPSQ9ULU8 1353 aa39.95■■■■□ 3.99
SMARCD3-203ENST00000392811 RAPGEF2Q9Y4G8 1499 aa39.91■■■■□ 3.98
SMARCD3-203ENST00000392811 CLIP1P30622 1438 aa39.75■■■■□ 3.95
SMARCD3-203ENST00000392811 PRXQ9BXM0 1461 aa39.73■■■■□ 3.95
SMARCD3-203ENST00000392811 KIF27Q86VH2 1401 aa39.72■■■■□ 3.95
SMARCD3-203ENST00000392811 ERICH3Q5RHP9 1530 aa39.71■■■■□ 3.95
SMARCD3-203ENST00000392811 ZEB1P37275 1124 aaPredicted RBP39.61■■■■□ 3.93
SMARCD3-203ENST00000392811 TTBK1Q5TCY1 1321 aaPredicted RBP39.58■■■■□ 3.93
SMARCD3-203ENST00000392811 FANCD2Q9BXW9 1451 aa39.56■■■■□ 3.92
SMARCD3-203ENST00000392811 VPS8Q8N3P4 1428 aa39.52■■■■□ 3.92
SMARCD3-203ENST00000392811 FGD5Q6ZNL6 1462 aa39.5■■■■□ 3.91
SMARCD3-203ENST00000392811 CUX2O14529 1486 aa39.45■■■■□ 3.91
SMARCD3-203ENST00000392811 NESP48681 1621 aa39.43■■■■□ 3.9
SMARCD3-203ENST00000392811 RANGAP1P46060 587 aaPredicted RBP39.42■■■■□ 3.9
SMARCD3-203ENST00000392811 DNMBPQ6XZF7 1577 aa39.33■■■■□ 3.89
SMARCD3-203ENST00000392811 IGF1RP08069 1367 aa39.32■■■■□ 3.88
SMARCD3-203ENST00000392811 LAMC3Q9Y6N6 1575 aa39.29■■■■□ 3.88
SMARCD3-203ENST00000392811 ARAP1Q96P48 1450 aa39.25■■■■□ 3.87
SMARCD3-203ENST00000392811 TOPBP1Q92547 1522 aa39.24■■■■□ 3.87
SMARCD3-203ENST00000392811 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.19■■■■□ 3.86
SMARCD3-203ENST00000392811 APLP2Q06481 763 aa39.18■■■■□ 3.86
SMARCD3-203ENST00000392811 POLA1P09884 1462 aaPredicted RBP39.14■■■■□ 3.86
SMARCD3-203ENST00000392811 CARMIL1Q5VZK9 1371 aa39.13■■■■□ 3.85
SMARCD3-203ENST00000392811 DNAJC5BQ9UF47 199 aa39.13■■■■□ 3.85
SMARCD3-203ENST00000392811 RAD54L2Q9Y4B4 1467 aa39.12■■■■□ 3.85
SMARCD3-203ENST00000392811 ABCA10Q8WWZ4 1543 aa39.09■■■■□ 3.85
SMARCD3-203ENST00000392811 CCER1Q8TC90 406 aaPredicted RBP39.09■■■■□ 3.85
SMARCD3-203ENST00000392811 ARHGAP35Q9NRY4 1499 aa39.04■■■■□ 3.84
SMARCD3-203ENST00000392811 URB2Q14146 1524 aaKnown RBP39.03■■■■□ 3.84
SMARCD3-203ENST00000392811 PDS5BQ9NTI5 1447 aa38.98■■■■□ 3.83
SMARCD3-203ENST00000392811 WDR97A6NE52 1622 aa38.87■■■■□ 3.81
SMARCD3-203ENST00000392811 KIF21AQ7Z4S6 1674 aa38.87■■■■□ 3.81
SMARCD3-203ENST00000392811 CUL7Q14999 1698 aa38.81■■■■□ 3.8
SMARCD3-203ENST00000392811 KANK4Q5T7N3 995 aaPredicted RBP38.77■■■■□ 3.8
SMARCD3-203ENST00000392811 HNRNPUL2Q1KMD3 747 aaKnown RBP38.77■■■■□ 3.8
SMARCD3-203ENST00000392811 ABCA5Q8WWZ7 1642 aa38.71■■■■□ 3.79
SMARCD3-203ENST00000392811 TDRD9Q8NDG6 1382 aaKnown RBP38.64■■■■□ 3.78
SMARCD3-203ENST00000392811 GAPVD1Q14C86 1478 aa38.6■■■■□ 3.77
SMARCD3-203ENST00000392811 CTTNBP2Q8WZ74 1663 aa38.58■■■■□ 3.77
SMARCD3-203ENST00000392811 TARBP1Q13395 1621 aaKnown RBP38.55■■■■□ 3.76
SMARCD3-203ENST00000392811 MAP3K1Q13233 1512 aa38.53■■■■□ 3.76
SMARCD3-203ENST00000392811 TIAM1Q13009 1591 aa38.52■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms