Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.5■■■□□ 2.15
PCDHA3Q9Y5H8 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.5■■■□□ 2.15
PCDHA3Q9Y5H8 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
PCDHA3Q9Y5H8 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
PCDHA3Q9Y5H8 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC28.46■■■□□ 2.15
PCDHA3Q9Y5H8 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
PCDHA3Q9Y5H8 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.44■■■□□ 2.14
PCDHA3Q9Y5H8 AP002365.1-201ENST00000603448 772 ntBASIC28.44■■■□□ 2.14
PCDHA3Q9Y5H8 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA3Q9Y5H8 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA3Q9Y5H8 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA3Q9Y5H8 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA3Q9Y5H8 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
PCDHA3Q9Y5H8 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.37■■■□□ 2.13
PCDHA3Q9Y5H8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA3Q9Y5H8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA3Q9Y5H8 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
PCDHA3Q9Y5H8 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.36■■■□□ 2.13
PCDHA3Q9Y5H8 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA3Q9Y5H8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA3Q9Y5H8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.35■■■□□ 2.13
PCDHA3Q9Y5H8 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA3Q9Y5H8 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
PCDHA3Q9Y5H8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHA3Q9Y5H8 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
PCDHA3Q9Y5H8 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHA3Q9Y5H8 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
PCDHA3Q9Y5H8 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
PCDHA3Q9Y5H8 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.29■■■□□ 2.12
PCDHA3Q9Y5H8 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHA3Q9Y5H8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA3Q9Y5H8 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA3Q9Y5H8 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA3Q9Y5H8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.27■■■□□ 2.12
PCDHA3Q9Y5H8 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA3Q9Y5H8 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.26■■■□□ 2.11
PCDHA3Q9Y5H8 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA3Q9Y5H8 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA3Q9Y5H8 ABCB10P3-201ENST00000561950 2166 ntBASIC28.26■■■□□ 2.11
PCDHA3Q9Y5H8 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 AL161658.1-201ENST00000623641 1967 ntBASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA3Q9Y5H8 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA3Q9Y5H8 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
PCDHA3Q9Y5H8 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA3Q9Y5H8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA3Q9Y5H8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA3Q9Y5H8 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCDHA3Q9Y5H8 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.21■■■□□ 2.11
PCDHA3Q9Y5H8 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
PCDHA3Q9Y5H8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA3Q9Y5H8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA3Q9Y5H8 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA3Q9Y5H8 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA3Q9Y5H8 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA3Q9Y5H8 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
PCDHA3Q9Y5H8 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA3Q9Y5H8 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA3Q9Y5H8 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
PCDHA3Q9Y5H8 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.16■■■□□ 2.1
PCDHA3Q9Y5H8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA3Q9Y5H8 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA3Q9Y5H8 ST7-AS1-201ENST00000456775 1889 ntBASIC28.15■■■□□ 2.1
PCDHA3Q9Y5H8 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA3Q9Y5H8 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA3Q9Y5H8 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCDHA3Q9Y5H8 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
PCDHA3Q9Y5H8 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.13■■■□□ 2.09
PCDHA3Q9Y5H8 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA3Q9Y5H8 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA3Q9Y5H8 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA3Q9Y5H8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA3Q9Y5H8 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
PCDHA3Q9Y5H8 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCDHA3Q9Y5H8 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PCDHA3Q9Y5H8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PCDHA3Q9Y5H8 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA3Q9Y5H8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA3Q9Y5H8 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA3Q9Y5H8 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA3Q9Y5H8 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA3Q9Y5H8 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA3Q9Y5H8 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA3Q9Y5H8 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA3Q9Y5H8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA3Q9Y5H8 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
PCDHA3Q9Y5H8 AC139426.1-201ENST00000568218 2529 ntBASIC28.02■■■□□ 2.08
PCDHA3Q9Y5H8 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCDHA3Q9Y5H8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms