Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
PTCD3Q96EY7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
PTCD3Q96EY7 AL161658.1-201ENST00000623641 1967 ntBASIC26.96■■□□□ 1.91
PTCD3Q96EY7 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
PTCD3Q96EY7 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.95■■□□□ 1.9
PTCD3Q96EY7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PTCD3Q96EY7 AL031258.1-201ENST00000623562 325 ntBASIC26.94■■□□□ 1.9
PTCD3Q96EY7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
PTCD3Q96EY7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.91■■□□□ 1.9
PTCD3Q96EY7 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
PTCD3Q96EY7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.9■■□□□ 1.9
PTCD3Q96EY7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
PTCD3Q96EY7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PTCD3Q96EY7 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PTCD3Q96EY7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PTCD3Q96EY7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
PTCD3Q96EY7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.85■■□□□ 1.89
PTCD3Q96EY7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.85■■□□□ 1.89
PTCD3Q96EY7 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.84■■□□□ 1.89
PTCD3Q96EY7 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PTCD3Q96EY7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.83■■□□□ 1.89
PTCD3Q96EY7 AC120057.4-201ENST00000624722 1615 ntBASIC26.82■■□□□ 1.88
PTCD3Q96EY7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTCD3Q96EY7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
PTCD3Q96EY7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
PTCD3Q96EY7 AC139426.1-201ENST00000568218 2529 ntBASIC26.8■■□□□ 1.88
PTCD3Q96EY7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.79■■□□□ 1.88
PTCD3Q96EY7 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PTCD3Q96EY7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.78■■□□□ 1.88
PTCD3Q96EY7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
PTCD3Q96EY7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PTCD3Q96EY7 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.77■■□□□ 1.88
PTCD3Q96EY7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.77■■□□□ 1.88
PTCD3Q96EY7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTCD3Q96EY7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.76■■□□□ 1.87
PTCD3Q96EY7 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
PTCD3Q96EY7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
PTCD3Q96EY7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTCD3Q96EY7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.75■■□□□ 1.87
PTCD3Q96EY7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.74■■□□□ 1.87
PTCD3Q96EY7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.74■■□□□ 1.87
PTCD3Q96EY7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD3Q96EY7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD3Q96EY7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD3Q96EY7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD3Q96EY7 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD3Q96EY7 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD3Q96EY7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.7■■□□□ 1.86
PTCD3Q96EY7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD3Q96EY7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.68■■□□□ 1.86
PTCD3Q96EY7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTCD3Q96EY7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
PTCD3Q96EY7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
PTCD3Q96EY7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PTCD3Q96EY7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
PTCD3Q96EY7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
PTCD3Q96EY7 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD3Q96EY7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD3Q96EY7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
PTCD3Q96EY7 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCD3Q96EY7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.61■■□□□ 1.85
PTCD3Q96EY7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PTCD3Q96EY7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
PTCD3Q96EY7 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.6■■□□□ 1.85
PTCD3Q96EY7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.59■■□□□ 1.85
PTCD3Q96EY7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.59■■□□□ 1.85
PTCD3Q96EY7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
PTCD3Q96EY7 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
PTCD3Q96EY7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
PTCD3Q96EY7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PTCD3Q96EY7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PTCD3Q96EY7 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
PTCD3Q96EY7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PTCD3Q96EY7 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.53■■□□□ 1.84
PTCD3Q96EY7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTCD3Q96EY7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTCD3Q96EY7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
PTCD3Q96EY7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTCD3Q96EY7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.51■■□□□ 1.83
PTCD3Q96EY7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTCD3Q96EY7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTCD3Q96EY7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.5■■□□□ 1.83
PTCD3Q96EY7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PTCD3Q96EY7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PTCD3Q96EY7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCD3Q96EY7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCD3Q96EY7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.47■■□□□ 1.83
PTCD3Q96EY7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD3Q96EY7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD3Q96EY7 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
PTCD3Q96EY7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.45■■□□□ 1.82
PTCD3Q96EY7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PTCD3Q96EY7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.44■■□□□ 1.82
PTCD3Q96EY7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.44■■□□□ 1.82
PTCD3Q96EY7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD3Q96EY7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD3Q96EY7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD3Q96EY7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD3Q96EY7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD3Q96EY7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms