Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LINC01006Q8NI28 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LINC01006Q8NI28 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.5■■□□□ 1.03
LINC01006Q8NI28 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LINC01006Q8NI28 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LINC01006Q8NI28 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.49■■□□□ 1.03
LINC01006Q8NI28 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
LINC01006Q8NI28 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
LINC01006Q8NI28 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LINC01006Q8NI28 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.48■■□□□ 1.03
LINC01006Q8NI28 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LINC01006Q8NI28 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LINC01006Q8NI28 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.48■■□□□ 1.03
LINC01006Q8NI28 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
LINC01006Q8NI28 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.46■■□□□ 1.03
LINC01006Q8NI28 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LINC01006Q8NI28 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LINC01006Q8NI28 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LINC01006Q8NI28 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.45■■□□□ 1.02
LINC01006Q8NI28 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.45■■□□□ 1.02
LINC01006Q8NI28 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.44■■□□□ 1.02
LINC01006Q8NI28 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.43■■□□□ 1.02
LINC01006Q8NI28 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LINC01006Q8NI28 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LINC01006Q8NI28 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LINC01006Q8NI28 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.42■■□□□ 1.02
LINC01006Q8NI28 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
LINC01006Q8NI28 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LINC01006Q8NI28 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LINC01006Q8NI28 ZNRF2P2-203ENST00000454624 420 ntBASIC21.4■■□□□ 1.02
LINC01006Q8NI28 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC21.4■■□□□ 1.02
LINC01006Q8NI28 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LINC01006Q8NI28 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LINC01006Q8NI28 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LINC01006Q8NI28 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LINC01006Q8NI28 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LINC01006Q8NI28 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.38■■□□□ 1.01
LINC01006Q8NI28 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
LINC01006Q8NI28 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LINC01006Q8NI28 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LINC01006Q8NI28 HLA-V-202ENST00000446817 847 ntBASIC21.37■■□□□ 1.01
LINC01006Q8NI28 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.37■■□□□ 1.01
LINC01006Q8NI28 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LINC01006Q8NI28 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.36■■□□□ 1.01
LINC01006Q8NI28 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LINC01006Q8NI28 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LINC01006Q8NI28 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC01006Q8NI28 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC01006Q8NI28 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.34■■□□□ 1.01
LINC01006Q8NI28 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.34■■□□□ 1.01
LINC01006Q8NI28 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LINC01006Q8NI28 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LINC01006Q8NI28 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LINC01006Q8NI28 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LINC01006Q8NI28 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.31■■□□□ 1
LINC01006Q8NI28 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.31■■□□□ 1
LINC01006Q8NI28 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.3■■□□□ 1
LINC01006Q8NI28 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.3■■□□□ 1
LINC01006Q8NI28 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LINC01006Q8NI28 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01006Q8NI28 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01006Q8NI28 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.29■■□□□ 1
LINC01006Q8NI28 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.29■■□□□ 1
LINC01006Q8NI28 DUX4L29-201ENST00000425409 679 ntBASIC21.29■■□□□ 1
LINC01006Q8NI28 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01006Q8NI28 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LINC01006Q8NI28 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.28■■□□□ 1
LINC01006Q8NI28 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.28■■□□□ 1
LINC01006Q8NI28 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LINC01006Q8NI28 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.27■■□□□ 1
LINC01006Q8NI28 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.27■■□□□ 1
LINC01006Q8NI28 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.26■□□□□ 0.99
LINC01006Q8NI28 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LINC01006Q8NI28 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.24■□□□□ 0.99
LINC01006Q8NI28 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.22■□□□□ 0.99
LINC01006Q8NI28 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.22■□□□□ 0.99
LINC01006Q8NI28 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LINC01006Q8NI28 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01006Q8NI28 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.21■□□□□ 0.99
LINC01006Q8NI28 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.2■□□□□ 0.98
LINC01006Q8NI28 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
LINC01006Q8NI28 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LINC01006Q8NI28 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.2■□□□□ 0.98
LINC01006Q8NI28 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LINC01006Q8NI28 AC021231.2-201ENST00000594613 730 ntBASIC21.19■□□□□ 0.98
LINC01006Q8NI28 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LINC01006Q8NI28 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LINC01006Q8NI28 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LINC01006Q8NI28 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LINC01006Q8NI28 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LINC01006Q8NI28 AC108673.1-201ENST00000510422 1159 ntBASIC21.17■□□□□ 0.98
LINC01006Q8NI28 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LINC01006Q8NI28 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01006Q8NI28 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01006Q8NI28 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LINC01006Q8NI28 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LINC01006Q8NI28 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.15■□□□□ 0.98
LINC01006Q8NI28 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.14■□□□□ 0.98
LINC01006Q8NI28 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LINC01006Q8NI28 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms