RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 NISCHQ9Y2I1 1504 aa65.2■■■■■ 8.03
PVT1-219ENST00000523427 ABCC9O60706 1549 aa59.17■■■■■ 7.06
PVT1-219ENST00000523427 CCDC180Q9P1Z9 1646 aa58.51■■■■■ 6.96
PVT1-219ENST00000523427 RB1CC1Q8TDY2 1594 aa55.98■■■■■ 6.55
PVT1-219ENST00000523427 DNAJC5BQ9UF47 199 aa55.85■■■■■ 6.53
PVT1-219ENST00000523427 DCAF8L2P0C7V8 631 aa55.61■■■■■ 6.49
PVT1-219ENST00000523427 NACADO15069 1562 aa55.48■■■■■ 6.47
PVT1-219ENST00000523427 PABPN1Q86U42 306 aaKnown RBP eCLIP55.15■■■■■ 6.42
PVT1-219ENST00000523427 UNC13AQ9UPW8 1703 aa54.65■■■■■ 6.34
PVT1-219ENST00000523427 MYO15BQ96JP2 1530 aa54.47■■■■■ 6.31
PVT1-219ENST00000523427 BICRAQ9NZM4 1560 aa54.35■■■■■ 6.29
PVT1-219ENST00000523427 ZCCHC6Q5VYS8 1495 aaKnown RBP53.92■■■■■ 6.22
PVT1-219ENST00000523427 DCAF1Q9Y4B6 1507 aa53.68■■■■■ 6.18
PVT1-219ENST00000523427 SCRIBQ14160 1630 aa53.53■■■■■ 6.16
PVT1-219ENST00000523427 SHROOM4Q9ULL8 1493 aa53.42■■■■■ 6.14
PVT1-219ENST00000523427 CC2D2AQ9P2K1 1620 aa53.3■■■■■ 6.12
PVT1-219ENST00000523427 CECR2Q9BXF3 1484 aa53.27■■■■■ 6.12
PVT1-219ENST00000523427 EIF4G1Q04637 1599 aaKnown RBP53.08■■■■■ 6.09
PVT1-219ENST00000523427 DNAJC5Q9H3Z4 198 aa51.46■■■■■ 5.83
PVT1-219ENST00000523427 NCAPD3P42695 1498 aa51.26■■■■■ 5.8
PVT1-219ENST00000523427 ATAD2BQ9ULI0 1458 aa51.1■■■■■ 5.77
PVT1-219ENST00000523427 ERCC6Q03468 1493 aa51.1■■■■■ 5.77
PVT1-219ENST00000523427 CUX2O14529 1486 aa50.95■■■■■ 5.75
PVT1-219ENST00000523427 SMARCA4P51532 1647 aa50.92■■■■■ 5.74
PVT1-219ENST00000523427 SMARCA2P51531 1590 aa50.88■■■■■ 5.74
PVT1-219ENST00000523427 HMGXB3Q12766 1538 aa50.77■■■■■ 5.72
PVT1-219ENST00000523427 NESP48681 1621 aa50.71■■■■■ 5.71
PVT1-219ENST00000523427 BAZ1BQ9UIG0 1483 aaKnown RBP50.62■■■■■ 5.69
PVT1-219ENST00000523427 BAZ1AQ9NRL2 1556 aaPredicted RBP50.61■■■■■ 5.69
PVT1-219ENST00000523427 MROH2BQ7Z745 1585 aa50.3■■■■■ 5.64
PVT1-219ENST00000523427 PEG3Q9GZU2 1588 aa50.3■■■■■ 5.64
PVT1-219ENST00000523427 LAMC3Q9Y6N6 1575 aa50.13■■■■■ 5.61
PVT1-219ENST00000523427 THOC2Q8NI27 1593 aaKnown RBP50.09■■■■■ 5.61
PVT1-219ENST00000523427 PDS5BQ9NTI5 1447 aa49.95■■■■■ 5.59
PVT1-219ENST00000523427 KIF21AQ7Z4S6 1674 aa49.92■■■■■ 5.58
PVT1-219ENST00000523427 CADPSQ9ULU8 1353 aa49.76■■■■■ 5.56
PVT1-219ENST00000523427 WIZO95785 1651 aa49.68■■■■■ 5.54
PVT1-219ENST00000523427 MRC2Q9UBG0 1479 aa49.52■■■■■ 5.52
PVT1-219ENST00000523427 WDR62O43379 1518 aa49.34■■■■■ 5.49
PVT1-219ENST00000523427 TRIM41Q8WV44 630 aa49.29■■■■■ 5.48
PVT1-219ENST00000523427 CEP164Q9UPV0 1460 aa49.27■■■■■ 5.48
PVT1-219ENST00000523427 FANCD2Q9BXW9 1451 aa49.2■■■■■ 5.47
PVT1-219ENST00000523427 RSF1Q96T23 1441 aaPredicted RBP49.13■■■■■ 5.46
PVT1-219ENST00000523427 CFTRP13569 1480 aa49.06■■■■■ 5.44
PVT1-219ENST00000523427 TOP2AP11388 1531 aaKnown RBP48.95■■■■■ 5.43
PVT1-219ENST00000523427 URB2Q14146 1524 aaKnown RBP48.81■■■■■ 5.4
PVT1-219ENST00000523427 OSCARQ8IYS5 282 aa48.76■■■■■ 5.4
PVT1-219ENST00000523427 CCDC88BA6NC98 1476 aa48.5■■■■■ 5.35
PVT1-219ENST00000523427 PRDM2Q13029 1718 aa48.39■■■■■ 5.34
PVT1-219ENST00000523427 ZNF608Q9ULD9 1512 aaPredicted RBP48.32■■■■■ 5.33
PVT1-219ENST00000523427 IFT140Q96RY7 1462 aa48.28■■■■■ 5.32
PVT1-219ENST00000523427 TOPBP1Q92547 1522 aa48.21■■■■■ 5.31
PVT1-219ENST00000523427 RIMBP3CA6NJZ7 1639 aa48.04■■■■■ 5.28
PVT1-219ENST00000523427 RIMBP3BA6NNM3 1639 aa48.04■■■■■ 5.28
PVT1-219ENST00000523427 RIMBP3Q9UFD9 1639 aa48.04■■■■■ 5.28
PVT1-219ENST00000523427 ABCC8Q09428 1581 aa48.01■■■■■ 5.28
PVT1-219ENST00000523427 DNMBPQ6XZF7 1577 aa47.96■■■■■ 5.27
PVT1-219ENST00000523427 EIF4G3O43432 1585 aaKnown RBP47.93■■■■■ 5.26
PVT1-219ENST00000523427 AQRO60306 1485 aaKnown RBP eCLIP47.88■■■■■ 5.26
PVT1-219ENST00000523427 ARHGEF11O15085 1522 aa47.86■■■■■ 5.25
PVT1-219ENST00000523427 FBLN2P98095 1184 aa47.81■■■■■ 5.24
PVT1-219ENST00000523427 CYB5RLQ6IPT4 315 aa47.74■■■■■ 5.23
PVT1-219ENST00000523427 TARBP1Q13395 1621 aaKnown RBP47.74■■■■■ 5.23
PVT1-219ENST00000523427 POLA1P09884 1462 aaPredicted RBP47.7■■■■■ 5.23
PVT1-219ENST00000523427 CHD1O14646 1710 aa47.64■■■■■ 5.22
PVT1-219ENST00000523427 RAD54L2Q9Y4B4 1467 aa47.63■■■■■ 5.22
PVT1-219ENST00000523427 TDRD9Q8NDG6 1382 aaKnown RBP47.57■■■■■ 5.21
PVT1-219ENST00000523427 SOGA1O94964 1423 aa47.56■■■■■ 5.2
PVT1-219ENST00000523427 FGD5Q6ZNL6 1462 aa47.39■■■■■ 5.18
PVT1-219ENST00000523427 ARAP1Q96P48 1450 aa47.39■■■■■ 5.18
PVT1-219ENST00000523427 TRHP20396 242 aaPredicted RBP47.38■■■■■ 5.18
PVT1-219ENST00000523427 SNAPC4Q5SXM2 1469 aa47.33■■■■■ 5.17
PVT1-219ENST00000523427 CHMP7Q8WUX9 453 aaPredicted RBP47.29■■■■■ 5.16
PVT1-219ENST00000523427 CUX1P39880 1505 aa47.26■■■■■ 5.16
PVT1-219ENST00000523427 GRIN2BQ13224 1484 aa47.11■■■■■ 5.13
PVT1-219ENST00000523427 WDR97A6NE52 1622 aa47.1■■■■■ 5.13
PVT1-219ENST00000523427 MAGI1Q96QZ7 1491 aaPredicted RBP47.09■■■■■ 5.13
PVT1-219ENST00000523427 CLASP1Q7Z460 1538 aa47.05■■■■■ 5.12
PVT1-219ENST00000523427 SYNJ1O43426 1573 aa47.04■■■■■ 5.12
PVT1-219ENST00000523427 SUPT5HO00267 1087 aaKnown RBP47■■■■■ 5.11
PVT1-219ENST00000523427 SYNJ2O15056 1496 aa46.97■■■■■ 5.11
PVT1-219ENST00000523427 GAPVD1Q14C86 1478 aa46.93■■■■■ 5.1
PVT1-219ENST00000523427 PBRM1Q86U86 1689 aa46.83■■■■■ 5.09
PVT1-219ENST00000523427 ABCA10Q8WWZ4 1543 aa46.74■■■■■ 5.07
PVT1-219ENST00000523427 ABCA5Q8WWZ7 1642 aa46.67■■■■■ 5.06
PVT1-219ENST00000523427 WRNQ14191 1432 aaPredicted RBP eCLIP46.56■■■■■ 5.04
PVT1-219ENST00000523427 GRIN2AQ12879 1464 aa46.5■■■■■ 5.03
PVT1-219ENST00000523427 ERCC6L2Q5T890 1561 aa46.43■■■■■ 5.02
PVT1-219ENST00000523427 ADAMTS12P58397 1594 aa46.39■■■■■ 5.02
PVT1-219ENST00000523427 TOP2BQ02880 1626 aa46.34■■■■■ 5.01
PVT1-219ENST00000523427 CEP170Q5SW79 1584 aa46.34■■■■■ 5.01
PVT1-219ENST00000523427 NUP160Q12769 1436 aa46.31■■■■■ 5
PVT1-219ENST00000523427 BIVM-ERCC5R4GMW8 1640 aa46.31■■■■■ 5
PVT1-219ENST00000523427 FHAD1B1AJZ9 1412 aa46.29■■■■■ 5
PVT1-219ENST00000523427 AEBP2Q6ZN18 517 aaPredicted RBP46.24■■■■■ 4.99
PVT1-219ENST00000523427 ERICH3Q5RHP9 1530 aa46.13■■■■■ 4.97
PVT1-219ENST00000523427 SHROOM2Q13796 1616 aa46.07■■■■■ 4.97
PVT1-219ENST00000523427 PRG4Q92954 1404 aaPredicted RBP46.02■■■■■ 4.96
PVT1-219ENST00000523427 JPH4Q96JJ6 628 aa46■■■■■ 4.95
PVT1-219ENST00000523427 RUSC2Q8N2Y8 1516 aa45.72■■■■■ 4.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms