Protein–RNA interactions for Protein: Q7Z7F7

MRPL55, 39S ribosomal protein L55, mitochondrial, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55Q7Z7F7 AL031258.1-201ENST00000623562 325 ntBASIC17.32■□□□□ 0.36
MRPL55Q7Z7F7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MRPL55Q7Z7F7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC17.31■□□□□ 0.36
MRPL55Q7Z7F7 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MRPL55Q7Z7F7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
MRPL55Q7Z7F7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MRPL55Q7Z7F7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MRPL55Q7Z7F7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC17.27■□□□□ 0.36
MRPL55Q7Z7F7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
MRPL55Q7Z7F7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MRPL55Q7Z7F7 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRPL55Q7Z7F7 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRPL55Q7Z7F7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MRPL55Q7Z7F7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRPL55Q7Z7F7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRPL55Q7Z7F7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRPL55Q7Z7F7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRPL55Q7Z7F7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRPL55Q7Z7F7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
MRPL55Q7Z7F7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.14■□□□□ 0.33
MRPL55Q7Z7F7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC17.13■□□□□ 0.33
MRPL55Q7Z7F7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MRPL55Q7Z7F7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRPL55Q7Z7F7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MRPL55Q7Z7F7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MRPL55Q7Z7F7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MRPL55Q7Z7F7 ABCB10P1-201ENST00000614297 2181 ntBASIC17.08■□□□□ 0.33
MRPL55Q7Z7F7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MRPL55Q7Z7F7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC17.08■□□□□ 0.32
MRPL55Q7Z7F7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
MRPL55Q7Z7F7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC17.05■□□□□ 0.32
MRPL55Q7Z7F7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRPL55Q7Z7F7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRPL55Q7Z7F7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 AL161658.1-201ENST00000623641 1967 ntBASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
MRPL55Q7Z7F7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRPL55Q7Z7F7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MRPL55Q7Z7F7 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms