Protein–RNA interactions for Protein: O00526

UPK2, Uroplakin-2, humanhuman

Predictions only

Length 184 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK2O00526 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
UPK2O00526 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPK2O00526 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.75■■□□□ 1.07
UPK2O00526 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UPK2O00526 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK2O00526 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UPK2O00526 ABCB10P1-201ENST00000614297 2181 ntBASIC21.74■■□□□ 1.07
UPK2O00526 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK2O00526 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UPK2O00526 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.71■■□□□ 1.07
UPK2O00526 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
UPK2O00526 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK2O00526 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK2O00526 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK2O00526 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.69■■□□□ 1.06
UPK2O00526 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
UPK2O00526 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK2O00526 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK2O00526 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
UPK2O00526 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.66■■□□□ 1.06
UPK2O00526 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK2O00526 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK2O00526 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK2O00526 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK2O00526 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
UPK2O00526 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
UPK2O00526 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
UPK2O00526 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
UPK2O00526 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.62■■□□□ 1.05
UPK2O00526 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
UPK2O00526 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.62■■□□□ 1.05
UPK2O00526 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
UPK2O00526 AL161658.1-201ENST00000623641 1967 ntBASIC21.61■■□□□ 1.05
UPK2O00526 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
UPK2O00526 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.61■■□□□ 1.05
UPK2O00526 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
UPK2O00526 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK2O00526 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK2O00526 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
UPK2O00526 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
UPK2O00526 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UPK2O00526 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
UPK2O00526 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
UPK2O00526 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.58■■□□□ 1.05
UPK2O00526 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.58■■□□□ 1.05
UPK2O00526 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK2O00526 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
UPK2O00526 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
UPK2O00526 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.57■■□□□ 1.04
UPK2O00526 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
UPK2O00526 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
UPK2O00526 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
UPK2O00526 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
UPK2O00526 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK2O00526 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
UPK2O00526 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK2O00526 ABCB10P3-201ENST00000561950 2166 ntBASIC21.53■■□□□ 1.04
UPK2O00526 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.53■■□□□ 1.04
UPK2O00526 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
UPK2O00526 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
UPK2O00526 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK2O00526 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK2O00526 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK2O00526 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK2O00526 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.51■■□□□ 1.03
UPK2O00526 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK2O00526 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK2O00526 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UPK2O00526 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UPK2O00526 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK2O00526 ST7-AS1-201ENST00000456775 1889 ntBASIC21.48■■□□□ 1.03
UPK2O00526 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK2O00526 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UPK2O00526 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK2O00526 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK2O00526 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.46■■□□□ 1.03
UPK2O00526 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
UPK2O00526 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UPK2O00526 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UPK2O00526 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UPK2O00526 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UPK2O00526 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UPK2O00526 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.44■■□□□ 1.02
UPK2O00526 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
UPK2O00526 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.43■■□□□ 1.02
UPK2O00526 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
UPK2O00526 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
UPK2O00526 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
UPK2O00526 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
UPK2O00526 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms