Protein–RNA interactions for Protein: A0A1W2PPF3

DUXB, Double homeobox B, humanhuman

Predictions only

Length 345 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DUXBA0A1W2PPF3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
DUXBA0A1W2PPF3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DUXBA0A1W2PPF3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
DUXBA0A1W2PPF3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DUXBA0A1W2PPF3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.2■■□□□ 1.14
DUXBA0A1W2PPF3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DUXBA0A1W2PPF3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DUXBA0A1W2PPF3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DUXBA0A1W2PPF3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
DUXBA0A1W2PPF3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
DUXBA0A1W2PPF3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DUXBA0A1W2PPF3 MVK-208ENST00000539696 608 ntTSL 5 BASIC22.16■■□□□ 1.14
DUXBA0A1W2PPF3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
DUXBA0A1W2PPF3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DUXBA0A1W2PPF3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DUXBA0A1W2PPF3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.15■■□□□ 1.14
DUXBA0A1W2PPF3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
DUXBA0A1W2PPF3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
DUXBA0A1W2PPF3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DUXBA0A1W2PPF3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DUXBA0A1W2PPF3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
DUXBA0A1W2PPF3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
DUXBA0A1W2PPF3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
DUXBA0A1W2PPF3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DUXBA0A1W2PPF3 AL161658.1-201ENST00000623641 1967 ntBASIC22.1■■□□□ 1.13
DUXBA0A1W2PPF3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
DUXBA0A1W2PPF3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.09■■□□□ 1.13
DUXBA0A1W2PPF3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
DUXBA0A1W2PPF3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
DUXBA0A1W2PPF3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
DUXBA0A1W2PPF3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
DUXBA0A1W2PPF3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
DUXBA0A1W2PPF3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
DUXBA0A1W2PPF3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
DUXBA0A1W2PPF3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
DUXBA0A1W2PPF3 ST7-AS1-201ENST00000456775 1889 ntBASIC22.06■■□□□ 1.12
DUXBA0A1W2PPF3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
DUXBA0A1W2PPF3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
DUXBA0A1W2PPF3 AC139426.1-201ENST00000568218 2529 ntBASIC22.05■■□□□ 1.12
DUXBA0A1W2PPF3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
DUXBA0A1W2PPF3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.03■■□□□ 1.12
DUXBA0A1W2PPF3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
DUXBA0A1W2PPF3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC22.03■■□□□ 1.12
DUXBA0A1W2PPF3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
DUXBA0A1W2PPF3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DUXBA0A1W2PPF3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
DUXBA0A1W2PPF3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
DUXBA0A1W2PPF3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
DUXBA0A1W2PPF3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22■■□□□ 1.11
DUXBA0A1W2PPF3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC22■■□□□ 1.11
DUXBA0A1W2PPF3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC21.99■■□□□ 1.11
DUXBA0A1W2PPF3 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC21.98■■□□□ 1.11
DUXBA0A1W2PPF3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
DUXBA0A1W2PPF3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DUXBA0A1W2PPF3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.97■■□□□ 1.11
DUXBA0A1W2PPF3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DUXBA0A1W2PPF3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DUXBA0A1W2PPF3 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DUXBA0A1W2PPF3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.95■■□□□ 1.1
DUXBA0A1W2PPF3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DUXBA0A1W2PPF3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
DUXBA0A1W2PPF3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.94■■□□□ 1.1
DUXBA0A1W2PPF3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
DUXBA0A1W2PPF3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DUXBA0A1W2PPF3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DUXBA0A1W2PPF3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
DUXBA0A1W2PPF3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
DUXBA0A1W2PPF3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DUXBA0A1W2PPF3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
DUXBA0A1W2PPF3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DUXBA0A1W2PPF3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
DUXBA0A1W2PPF3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DUXBA0A1W2PPF3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC21.89■■□□□ 1.09
DUXBA0A1W2PPF3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
DUXBA0A1W2PPF3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.88■■□□□ 1.09
DUXBA0A1W2PPF3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DUXBA0A1W2PPF3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.88■■□□□ 1.09
DUXBA0A1W2PPF3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DUXBA0A1W2PPF3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DUXBA0A1W2PPF3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DUXBA0A1W2PPF3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
DUXBA0A1W2PPF3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DUXBA0A1W2PPF3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DUXBA0A1W2PPF3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DUXBA0A1W2PPF3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.85■■□□□ 1.09
DUXBA0A1W2PPF3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DUXBA0A1W2PPF3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DUXBA0A1W2PPF3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
DUXBA0A1W2PPF3 AC142086.6-201ENST00000621154 1765 ntBASIC21.84■■□□□ 1.09
DUXBA0A1W2PPF3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DUXBA0A1W2PPF3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
DUXBA0A1W2PPF3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
DUXBA0A1W2PPF3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DUXBA0A1W2PPF3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DUXBA0A1W2PPF3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
DUXBA0A1W2PPF3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
DUXBA0A1W2PPF3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DUXBA0A1W2PPF3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.81■■□□□ 1.08
DUXBA0A1W2PPF3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
DUXBA0A1W2PPF3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms