Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.81■■□□□ 1.88
SLC28A1O00337 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SLC28A1O00337 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
SLC28A1O00337 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SLC28A1O00337 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.77■■□□□ 1.88
SLC28A1O00337 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SLC28A1O00337 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
SLC28A1O00337 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.75■■□□□ 1.87
SLC28A1O00337 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
SLC28A1O00337 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.74■■□□□ 1.87
SLC28A1O00337 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SLC28A1O00337 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.72■■□□□ 1.87
SLC28A1O00337 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC28A1O00337 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC28A1O00337 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
SLC28A1O00337 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.71■■□□□ 1.87
SLC28A1O00337 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
SLC28A1O00337 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SLC28A1O00337 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.7■■□□□ 1.86
SLC28A1O00337 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.69■■□□□ 1.86
SLC28A1O00337 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SLC28A1O00337 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SLC28A1O00337 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SLC28A1O00337 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SLC28A1O00337 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SLC28A1O00337 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SLC28A1O00337 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
SLC28A1O00337 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SLC28A1O00337 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.62■■□□□ 1.85
SLC28A1O00337 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.62■■□□□ 1.85
SLC28A1O00337 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SLC28A1O00337 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.6■■□□□ 1.85
SLC28A1O00337 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SLC28A1O00337 AC120057.4-201ENST00000624722 1615 ntBASIC26.6■■□□□ 1.85
SLC28A1O00337 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
SLC28A1O00337 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SLC28A1O00337 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SLC28A1O00337 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.57■■□□□ 1.84
SLC28A1O00337 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
SLC28A1O00337 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SLC28A1O00337 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SLC28A1O00337 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SLC28A1O00337 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.53■■□□□ 1.84
SLC28A1O00337 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
SLC28A1O00337 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.52■■□□□ 1.84
SLC28A1O00337 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SLC28A1O00337 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SLC28A1O00337 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SLC28A1O00337 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SLC28A1O00337 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.47■■□□□ 1.83
SLC28A1O00337 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.47■■□□□ 1.83
SLC28A1O00337 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SLC28A1O00337 DYNLL1-208ENST00000550178 581 ntBASIC26.47■■□□□ 1.83
SLC28A1O00337 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.46■■□□□ 1.83
SLC28A1O00337 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
SLC28A1O00337 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.44■■□□□ 1.82
SLC28A1O00337 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.44■■□□□ 1.82
SLC28A1O00337 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
SLC28A1O00337 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SLC28A1O00337 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SLC28A1O00337 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SLC28A1O00337 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
SLC28A1O00337 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SLC28A1O00337 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SLC28A1O00337 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.38■■□□□ 1.81
SLC28A1O00337 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SLC28A1O00337 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
SLC28A1O00337 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.36■■□□□ 1.81
SLC28A1O00337 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SLC28A1O00337 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SLC28A1O00337 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SLC28A1O00337 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.32■■□□□ 1.8
SLC28A1O00337 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SLC28A1O00337 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.31■■□□□ 1.8
SLC28A1O00337 AL031258.1-201ENST00000623562 325 ntBASIC26.3■■□□□ 1.8
SLC28A1O00337 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC28A1O00337 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
SLC28A1O00337 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SLC28A1O00337 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
SLC28A1O00337 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.25■■□□□ 1.79
SLC28A1O00337 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SLC28A1O00337 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SLC28A1O00337 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SLC28A1O00337 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SLC28A1O00337 AP002365.1-201ENST00000603448 772 ntBASIC26.23■■□□□ 1.79
SLC28A1O00337 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SLC28A1O00337 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SLC28A1O00337 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SLC28A1O00337 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SLC28A1O00337 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SLC28A1O00337 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.21■■□□□ 1.79
SLC28A1O00337 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
SLC28A1O00337 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SLC28A1O00337 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
SLC28A1O00337 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.17■■□□□ 1.78
SLC28A1O00337 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.16■■□□□ 1.78
SLC28A1O00337 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SLC28A1O00337 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.15■■□□□ 1.78
SLC28A1O00337 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SLC28A1O00337 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms