Protein–RNA interactions for Protein: A0A096LPE2

SAA2-SAA4, SAA2-SAA4 readthrough, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SAA2-SAA4A0A096LPE2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.72■■□□□ 1.23
SAA2-SAA4A0A096LPE2 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
SAA2-SAA4A0A096LPE2 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.7■■□□□ 1.23
SAA2-SAA4A0A096LPE2 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.7■■□□□ 1.22
SAA2-SAA4A0A096LPE2 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SAA2-SAA4A0A096LPE2 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
SAA2-SAA4A0A096LPE2 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SAA2-SAA4A0A096LPE2 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SAA2-SAA4A0A096LPE2 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SAA2-SAA4A0A096LPE2 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SAA2-SAA4A0A096LPE2 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 AP002365.1-201ENST00000603448 772 ntBASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SAA2-SAA4A0A096LPE2 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
SAA2-SAA4A0A096LPE2 ST7-205ENST00000393446 2114 ntTSL 5 BASIC22.63■■□□□ 1.21
SAA2-SAA4A0A096LPE2 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SAA2-SAA4A0A096LPE2 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC22.63■■□□□ 1.21
SAA2-SAA4A0A096LPE2 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
SAA2-SAA4A0A096LPE2 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC22.6■■□□□ 1.21
SAA2-SAA4A0A096LPE2 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
SAA2-SAA4A0A096LPE2 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC22.6■■□□□ 1.21
SAA2-SAA4A0A096LPE2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SAA2-SAA4A0A096LPE2 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
SAA2-SAA4A0A096LPE2 AL031258.1-201ENST00000623562 325 ntBASIC22.59■■□□□ 1.21
SAA2-SAA4A0A096LPE2 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SAA2-SAA4A0A096LPE2 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SAA2-SAA4A0A096LPE2 ST7-202ENST00000323984 2142 ntTSL 5 BASIC22.57■■□□□ 1.2
SAA2-SAA4A0A096LPE2 ST7-207ENST00000393449 2127 ntTSL 5 BASIC22.57■■□□□ 1.2
SAA2-SAA4A0A096LPE2 EBPL-203ENST00000378270 579 ntTSL 2 BASIC22.57■■□□□ 1.2
SAA2-SAA4A0A096LPE2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SAA2-SAA4A0A096LPE2 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SAA2-SAA4A0A096LPE2 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SAA2-SAA4A0A096LPE2 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.55■■□□□ 1.2
SAA2-SAA4A0A096LPE2 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SAA2-SAA4A0A096LPE2 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC22.54■■□□□ 1.2
SAA2-SAA4A0A096LPE2 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SAA2-SAA4A0A096LPE2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.53■■□□□ 1.2
SAA2-SAA4A0A096LPE2 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SAA2-SAA4A0A096LPE2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.52■■□□□ 1.2
SAA2-SAA4A0A096LPE2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SAA2-SAA4A0A096LPE2 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SAA2-SAA4A0A096LPE2 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
SAA2-SAA4A0A096LPE2 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SAA2-SAA4A0A096LPE2 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SAA2-SAA4A0A096LPE2 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SAA2-SAA4A0A096LPE2 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC22.51■■□□□ 1.19
SAA2-SAA4A0A096LPE2 AC120057.4-201ENST00000624722 1615 ntBASIC22.5■■□□□ 1.19
SAA2-SAA4A0A096LPE2 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
SAA2-SAA4A0A096LPE2 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.49■■□□□ 1.19
SAA2-SAA4A0A096LPE2 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SAA2-SAA4A0A096LPE2 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SAA2-SAA4A0A096LPE2 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SAA2-SAA4A0A096LPE2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.45■■□□□ 1.18
SAA2-SAA4A0A096LPE2 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SAA2-SAA4A0A096LPE2 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.44■■□□□ 1.18
SAA2-SAA4A0A096LPE2 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SAA2-SAA4A0A096LPE2 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC22.43■■□□□ 1.18
SAA2-SAA4A0A096LPE2 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SAA2-SAA4A0A096LPE2 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SAA2-SAA4A0A096LPE2 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC22.41■■□□□ 1.18
SAA2-SAA4A0A096LPE2 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC22.41■■□□□ 1.18
SAA2-SAA4A0A096LPE2 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SAA2-SAA4A0A096LPE2 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SAA2-SAA4A0A096LPE2 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SAA2-SAA4A0A096LPE2 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SAA2-SAA4A0A096LPE2 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
SAA2-SAA4A0A096LPE2 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC22.39■■□□□ 1.17
SAA2-SAA4A0A096LPE2 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SAA2-SAA4A0A096LPE2 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
SAA2-SAA4A0A096LPE2 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SAA2-SAA4A0A096LPE2 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SAA2-SAA4A0A096LPE2 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SAA2-SAA4A0A096LPE2 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SAA2-SAA4A0A096LPE2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
SAA2-SAA4A0A096LPE2 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SAA2-SAA4A0A096LPE2 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.31■■□□□ 1.16
SAA2-SAA4A0A096LPE2 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.31■■□□□ 1.16
SAA2-SAA4A0A096LPE2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SAA2-SAA4A0A096LPE2 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SAA2-SAA4A0A096LPE2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC22.29■■□□□ 1.16
SAA2-SAA4A0A096LPE2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SAA2-SAA4A0A096LPE2 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SAA2-SAA4A0A096LPE2 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SAA2-SAA4A0A096LPE2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SAA2-SAA4A0A096LPE2 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC22.27■■□□□ 1.16
SAA2-SAA4A0A096LPE2 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
SAA2-SAA4A0A096LPE2 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC22.27■■□□□ 1.16
SAA2-SAA4A0A096LPE2 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
SAA2-SAA4A0A096LPE2 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SAA2-SAA4A0A096LPE2 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SAA2-SAA4A0A096LPE2 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
SAA2-SAA4A0A096LPE2 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SAA2-SAA4A0A096LPE2 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SAA2-SAA4A0A096LPE2 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SAA2-SAA4A0A096LPE2 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC22.22■■□□□ 1.15
SAA2-SAA4A0A096LPE2 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms