Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD3Q7Z407 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.61■□□□□ 0.25
CSMD3Q7Z407 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD3Q7Z407 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 EDA-201ENST00000338901 1233 ntBASIC16.6■□□□□ 0.25
CSMD3Q7Z407 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CSMD3Q7Z407 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CSMD3Q7Z407 RASA4CP-201ENST00000424092 1398 ntBASIC16.58■□□□□ 0.25
CSMD3Q7Z407 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CSMD3Q7Z407 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CSMD3Q7Z407 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.58■□□□□ 0.25
CSMD3Q7Z407 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.58■□□□□ 0.25
CSMD3Q7Z407 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CSMD3Q7Z407 AP001330.3-201ENST00000520123 633 ntBASIC16.58■□□□□ 0.24
CSMD3Q7Z407 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSMD3Q7Z407 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSMD3Q7Z407 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CSMD3Q7Z407 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CSMD3Q7Z407 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CSMD3Q7Z407 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CSMD3Q7Z407 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC16.57■□□□□ 0.24
CSMD3Q7Z407 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CSMD3Q7Z407 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CSMD3Q7Z407 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CSMD3Q7Z407 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC16.54■□□□□ 0.24
CSMD3Q7Z407 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSMD3Q7Z407 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CSMD3Q7Z407 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 ST7-205ENST00000393446 2114 ntTSL 5 BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC16.53■□□□□ 0.24
CSMD3Q7Z407 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC16.52■□□□□ 0.24
CSMD3Q7Z407 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSMD3Q7Z407 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.52■□□□□ 0.24
CSMD3Q7Z407 AL136162.1-201ENST00000607711 1078 ntBASIC16.52■□□□□ 0.24
CSMD3Q7Z407 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CSMD3Q7Z407 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CSMD3Q7Z407 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CSMD3Q7Z407 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC16.52■□□□□ 0.23
CSMD3Q7Z407 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC16.52■□□□□ 0.23
CSMD3Q7Z407 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSMD3Q7Z407 MAG-206ENST00000597035 542 ntTSL 4 BASIC16.51■□□□□ 0.23
CSMD3Q7Z407 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSMD3Q7Z407 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CSMD3Q7Z407 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CSMD3Q7Z407 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSMD3Q7Z407 AF213884.3-201ENST00000563833 479 ntBASIC16.5■□□□□ 0.23
CSMD3Q7Z407 RARRES2P11-201ENST00000635158 484 ntBASIC16.5■□□□□ 0.23
CSMD3Q7Z407 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC16.5■□□□□ 0.23
CSMD3Q7Z407 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CSMD3Q7Z407 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSMD3Q7Z407 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 GRAMD4P4-201ENST00000613563 1115 ntBASIC16.49■□□□□ 0.23
CSMD3Q7Z407 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 SF1-220ENST00000626028 704 ntTSL 2 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC16.49■□□□□ 0.23
CSMD3Q7Z407 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSMD3Q7Z407 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CSMD3Q7Z407 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC16.48■□□□□ 0.23
CSMD3Q7Z407 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms