Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
ZNF560Q96MR9 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
ZNF560Q96MR9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZNF560Q96MR9 AC145285.7-201ENST00000614819 1539 ntBASIC31.05■■■□□ 2.56
ZNF560Q96MR9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
ZNF560Q96MR9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
ZNF560Q96MR9 DYNLL1-208ENST00000550178 581 ntBASIC31.02■■■□□ 2.56
ZNF560Q96MR9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
ZNF560Q96MR9 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.99■■■□□ 2.55
ZNF560Q96MR9 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.98■■■□□ 2.55
ZNF560Q96MR9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.98■■■□□ 2.55
ZNF560Q96MR9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.97■■■□□ 2.55
ZNF560Q96MR9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.97■■■□□ 2.55
ZNF560Q96MR9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
ZNF560Q96MR9 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
ZNF560Q96MR9 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
ZNF560Q96MR9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
ZNF560Q96MR9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
ZNF560Q96MR9 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
ZNF560Q96MR9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.93■■■□□ 2.54
ZNF560Q96MR9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
ZNF560Q96MR9 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZNF560Q96MR9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.87■■■□□ 2.53
ZNF560Q96MR9 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
ZNF560Q96MR9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
ZNF560Q96MR9 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
ZNF560Q96MR9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.85■■■□□ 2.53
ZNF560Q96MR9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
ZNF560Q96MR9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
ZNF560Q96MR9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.82■■■□□ 2.53
ZNF560Q96MR9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
ZNF560Q96MR9 AL031258.1-201ENST00000623562 325 ntBASIC30.79■■■□□ 2.52
ZNF560Q96MR9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
ZNF560Q96MR9 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
ZNF560Q96MR9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
ZNF560Q96MR9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ZNF560Q96MR9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
ZNF560Q96MR9 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
ZNF560Q96MR9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.63■■■□□ 2.49
ZNF560Q96MR9 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.63■■■□□ 2.49
ZNF560Q96MR9 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
ZNF560Q96MR9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
ZNF560Q96MR9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.61■■■□□ 2.49
ZNF560Q96MR9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.58■■■□□ 2.49
ZNF560Q96MR9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
ZNF560Q96MR9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.55■■■□□ 2.48
ZNF560Q96MR9 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
ZNF560Q96MR9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.53■■■□□ 2.48
ZNF560Q96MR9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.53■■■□□ 2.48
ZNF560Q96MR9 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
ZNF560Q96MR9 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
ZNF560Q96MR9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.5■■■□□ 2.47
ZNF560Q96MR9 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.5■■■□□ 2.47
ZNF560Q96MR9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZNF560Q96MR9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZNF560Q96MR9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZNF560Q96MR9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
ZNF560Q96MR9 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.47■■■□□ 2.47
ZNF560Q96MR9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.44■■■□□ 2.46
ZNF560Q96MR9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZNF560Q96MR9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ZNF560Q96MR9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ZNF560Q96MR9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
ZNF560Q96MR9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.37■■■□□ 2.45
ZNF560Q96MR9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.34■■■□□ 2.45
ZNF560Q96MR9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ZNF560Q96MR9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.33■■■□□ 2.45
ZNF560Q96MR9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
ZNF560Q96MR9 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.3■■■□□ 2.44
ZNF560Q96MR9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
ZNF560Q96MR9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.21■■■□□ 2.43
ZNF560Q96MR9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.2■■■□□ 2.42
ZNF560Q96MR9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ZNF560Q96MR9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.17■■■□□ 2.42
ZNF560Q96MR9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.17■■■□□ 2.42
ZNF560Q96MR9 RARRES2P7-201ENST00000567349 469 ntBASIC30.13■■■□□ 2.41
ZNF560Q96MR9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.13■■■□□ 2.41
ZNF560Q96MR9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
ZNF560Q96MR9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
ZNF560Q96MR9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.12■■■□□ 2.41
ZNF560Q96MR9 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ZNF560Q96MR9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
ZNF560Q96MR9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
ZNF560Q96MR9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
ZNF560Q96MR9 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
ZNF560Q96MR9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.04■■■□□ 2.4
ZNF560Q96MR9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
ZNF560Q96MR9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.03■■■□□ 2.4
ZNF560Q96MR9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
ZNF560Q96MR9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.01■■■□□ 2.39
ZNF560Q96MR9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
ZNF560Q96MR9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30■■■□□ 2.39
ZNF560Q96MR9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
ZNF560Q96MR9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
ZNF560Q96MR9 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
ZNF560Q96MR9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.97■■■□□ 2.39
ZNF560Q96MR9 SETD8P1-201ENST00000623146 1180 ntBASIC29.94■■■□□ 2.38
ZNF560Q96MR9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
ZNF560Q96MR9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
ZNF560Q96MR9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms