Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC37■■■■□ 3.51
CACNA1FO60840 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC36.99■■■■□ 3.51
CACNA1FO60840 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC36.99■■■■□ 3.51
CACNA1FO60840 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC36.95■■■■□ 3.51
CACNA1FO60840 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
CACNA1FO60840 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC36.92■■■■□ 3.5
CACNA1FO60840 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC36.9■■■■□ 3.5
CACNA1FO60840 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
CACNA1FO60840 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC36.89■■■■□ 3.5
CACNA1FO60840 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC36.89■■■■□ 3.5
CACNA1FO60840 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
CACNA1FO60840 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC36.86■■■■□ 3.49
CACNA1FO60840 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.49
CACNA1FO60840 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC36.82■■■■□ 3.49
CACNA1FO60840 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC36.82■■■■□ 3.48
CACNA1FO60840 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC36.8■■■■□ 3.48
CACNA1FO60840 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC36.8■■■■□ 3.48
CACNA1FO60840 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC36.79■■■■□ 3.48
CACNA1FO60840 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC36.79■■■■□ 3.48
CACNA1FO60840 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
CACNA1FO60840 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
CACNA1FO60840 DYNLL1-208ENST00000550178 581 ntBASIC36.75■■■■□ 3.47
CACNA1FO60840 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC36.75■■■■□ 3.47
CACNA1FO60840 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
CACNA1FO60840 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
CACNA1FO60840 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
CACNA1FO60840 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
CACNA1FO60840 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC36.68■■■■□ 3.46
CACNA1FO60840 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
CACNA1FO60840 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC36.62■■■■□ 3.45
CACNA1FO60840 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC36.6■■■■□ 3.45
CACNA1FO60840 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
CACNA1FO60840 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.59■■■■□ 3.45
CACNA1FO60840 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC36.58■■■■□ 3.45
CACNA1FO60840 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
CACNA1FO60840 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC36.52■■■■□ 3.44
CACNA1FO60840 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC36.48■■■■□ 3.43
CACNA1FO60840 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC36.47■■■■□ 3.43
CACNA1FO60840 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC36.47■■■■□ 3.43
CACNA1FO60840 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC36.44■■■■□ 3.42
CACNA1FO60840 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC36.4■■■■□ 3.42
CACNA1FO60840 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC36.39■■■■□ 3.42
CACNA1FO60840 EBPL-203ENST00000378270 579 ntTSL 2 BASIC36.38■■■■□ 3.41
CACNA1FO60840 AL031258.1-201ENST00000623562 325 ntBASIC36.36■■■■□ 3.41
CACNA1FO60840 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC36.36■■■■□ 3.41
CACNA1FO60840 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CACNA1FO60840 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
CACNA1FO60840 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC36.34■■■■□ 3.41
CACNA1FO60840 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC36.34■■■■□ 3.41
CACNA1FO60840 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC36.32■■■■□ 3.4
CACNA1FO60840 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC36.3■■■■□ 3.4
CACNA1FO60840 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC36.3■■■■□ 3.4
CACNA1FO60840 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
CACNA1FO60840 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC36.27■■■■□ 3.4
CACNA1FO60840 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC36.25■■■■□ 3.39
CACNA1FO60840 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC36.21■■■■□ 3.39
CACNA1FO60840 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC36.19■■■■□ 3.38
CACNA1FO60840 MVK-208ENST00000539696 608 ntTSL 5 BASIC36.17■■■■□ 3.38
CACNA1FO60840 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC36.17■■■■□ 3.38
CACNA1FO60840 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
CACNA1FO60840 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
CACNA1FO60840 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
CACNA1FO60840 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
CACNA1FO60840 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.37
CACNA1FO60840 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC36.06■■■■□ 3.36
CACNA1FO60840 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC36.05■■■■□ 3.36
CACNA1FO60840 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
CACNA1FO60840 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
CACNA1FO60840 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC36.03■■■■□ 3.36
CACNA1FO60840 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC36.03■■■■□ 3.36
CACNA1FO60840 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC36■■■■□ 3.35
CACNA1FO60840 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC36■■■■□ 3.35
CACNA1FO60840 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC35.97■■■■□ 3.35
CACNA1FO60840 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC35.96■■■■□ 3.35
CACNA1FO60840 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.95■■■■□ 3.35
CACNA1FO60840 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.94■■■■□ 3.34
CACNA1FO60840 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC35.93■■■■□ 3.34
CACNA1FO60840 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
CACNA1FO60840 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC35.85■■■■□ 3.33
CACNA1FO60840 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
CACNA1FO60840 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.82■■■■□ 3.32
CACNA1FO60840 RARRES2P7-201ENST00000567349 469 ntBASIC35.79■■■■□ 3.32
CACNA1FO60840 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
CACNA1FO60840 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC35.74■■■■□ 3.31
CACNA1FO60840 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC35.74■■■■□ 3.31
CACNA1FO60840 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.73■■■■□ 3.31
CACNA1FO60840 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
CACNA1FO60840 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC35.7■■■■□ 3.31
CACNA1FO60840 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.68■■■■□ 3.3
CACNA1FO60840 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
CACNA1FO60840 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC35.65■■■■□ 3.3
CACNA1FO60840 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
CACNA1FO60840 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC35.63■■■■□ 3.29
CACNA1FO60840 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
CACNA1FO60840 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.62■■■■□ 3.29
CACNA1FO60840 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.62■■■■□ 3.29
CACNA1FO60840 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
CACNA1FO60840 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC35.61■■■■□ 3.29
CACNA1FO60840 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
CACNA1FO60840 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.59■■■■□ 3.29
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms