Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.9■■□□□ 1.9
HMGN4O00479 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
HMGN4O00479 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HMGN4O00479 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
HMGN4O00479 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGN4O00479 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
HMGN4O00479 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
HMGN4O00479 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC26.82■■□□□ 1.88
HMGN4O00479 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
HMGN4O00479 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
HMGN4O00479 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
HMGN4O00479 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
HMGN4O00479 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
HMGN4O00479 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
HMGN4O00479 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
HMGN4O00479 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
HMGN4O00479 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC26.7■■□□□ 1.86
HMGN4O00479 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGN4O00479 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGN4O00479 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGN4O00479 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGN4O00479 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.62■■□□□ 1.85
HMGN4O00479 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGN4O00479 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.58■■□□□ 1.84
HMGN4O00479 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.56■■□□□ 1.84
HMGN4O00479 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.51■■□□□ 1.83
HMGN4O00479 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGN4O00479 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
HMGN4O00479 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HMGN4O00479 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGN4O00479 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.48■■□□□ 1.83
HMGN4O00479 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HMGN4O00479 AC006077.2-201ENST00000623591 457 ntBASIC26.47■■□□□ 1.83
HMGN4O00479 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
HMGN4O00479 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.43■■□□□ 1.82
HMGN4O00479 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGN4O00479 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HMGN4O00479 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC26.42■■□□□ 1.82
HMGN4O00479 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HMGN4O00479 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGN4O00479 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGN4O00479 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGN4O00479 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGN4O00479 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGN4O00479 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.38■■□□□ 1.81
HMGN4O00479 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGN4O00479 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGN4O00479 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
HMGN4O00479 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGN4O00479 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
HMGN4O00479 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGN4O00479 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGN4O00479 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGN4O00479 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGN4O00479 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGN4O00479 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGN4O00479 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.27■■□□□ 1.8
HMGN4O00479 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGN4O00479 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.27■■□□□ 1.8
HMGN4O00479 ZNRF2P1-201ENST00000441407 443 ntBASIC26.26■■□□□ 1.79
HMGN4O00479 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGN4O00479 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGN4O00479 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
HMGN4O00479 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HMGN4O00479 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HMGN4O00479 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.21■■□□□ 1.79
HMGN4O00479 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
HMGN4O00479 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
HMGN4O00479 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGN4O00479 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HMGN4O00479 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.14■■□□□ 1.77
HMGN4O00479 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.13■■□□□ 1.77
HMGN4O00479 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.13■■□□□ 1.77
HMGN4O00479 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
HMGN4O00479 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
HMGN4O00479 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.11■■□□□ 1.77
HMGN4O00479 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.11■■□□□ 1.77
HMGN4O00479 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGN4O00479 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGN4O00479 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGN4O00479 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGN4O00479 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.1■■□□□ 1.77
HMGN4O00479 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGN4O00479 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGN4O00479 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGN4O00479 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGN4O00479 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.07■■□□□ 1.76
HMGN4O00479 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGN4O00479 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGN4O00479 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
HMGN4O00479 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
HMGN4O00479 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.04■■□□□ 1.76
HMGN4O00479 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.04■■□□□ 1.76
HMGN4O00479 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.04■■□□□ 1.76
HMGN4O00479 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGN4O00479 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.03■■□□□ 1.76
HMGN4O00479 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
HMGN4O00479 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
HMGN4O00479 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HMGN4O00479 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms