Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC33.22■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC33.22■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC33.2■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC33.2■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC33.19■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 NTF6A-201ENST00000591175 560 ntBASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC33.18■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC33.17■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC33.17■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC33.16■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC33.15■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC33.15■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 AL449106.1-201ENST00000608517 1980 ntBASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
SENP3-EIF4A1A0A087X0R7 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC33.13■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC33.13■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC33.13■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC33.13■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 AL033527.3-201ENST00000566366 1196 ntBASIC33.12■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC33.11■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC33.1■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC33.09■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC33.09■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC33.08■■■□□ 2.89
SENP3-EIF4A1A0A087X0R7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC33.07■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 AC008813.1-201ENST00000536597 885 ntBASIC33.06■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 RNF126P1-201ENST00000567452 1320 ntBASIC33.05■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC33.05■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 GPX1-201ENST00000419349 1106 ntBASIC33.04■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC33.03■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC33.03■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 MIR219A2-201ENST00000608502 1504 ntBASIC33.02■■■□□ 2.88
SENP3-EIF4A1A0A087X0R7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC33.01■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC33.01■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC33■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.99■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.99■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC32.97■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC32.96■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SENP3-EIF4A1A0A087X0R7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.94■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms