RNA–Protein interactions for RNA: ENST00000528989.5

LDLRAD3-203, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LDLRAD3, Length 1,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-203ENST00000528989 NISCHQ9Y2I1 1504 aa57.76■■■■■ 6.84
LDLRAD3-203ENST00000528989 CCDC180Q9P1Z9 1646 aa50.61■■■■■ 5.69
LDLRAD3-203ENST00000528989 ABCC9O60706 1549 aa48.82■■■■■ 5.41
LDLRAD3-203ENST00000528989 ZCCHC6Q5VYS8 1495 aaKnown RBP48.32■■■■■ 5.33
LDLRAD3-203ENST00000528989 DCAF8L2P0C7V8 631 aa48.16■■■■■ 5.3
LDLRAD3-203ENST00000528989 DCAF1Q9Y4B6 1507 aa47.67■■■■■ 5.22
LDLRAD3-203ENST00000528989 MYO15BQ96JP2 1530 aa47.41■■■■■ 5.18
LDLRAD3-203ENST00000528989 NACADO15069 1562 aa47.41■■■■■ 5.18
LDLRAD3-203ENST00000528989 RB1CC1Q8TDY2 1594 aa47.2■■■■■ 5.15
LDLRAD3-203ENST00000528989 SHROOM4Q9ULL8 1493 aa46.68■■■■■ 5.06
LDLRAD3-203ENST00000528989 SCRIBQ14160 1630 aa46.56■■■■■ 5.04
LDLRAD3-203ENST00000528989 UNC13AQ9UPW8 1703 aa46.19■■■■■ 4.99
LDLRAD3-203ENST00000528989 PABPN1Q86U42 306 aaKnown RBP eCLIP45.97■■■■■ 4.95
LDLRAD3-203ENST00000528989 BICRAQ9NZM4 1560 aa45.85■■■■■ 4.93
LDLRAD3-203ENST00000528989 CECR2Q9BXF3 1484 aa45.03■■■■■ 4.8
LDLRAD3-203ENST00000528989 MROH2BQ7Z745 1585 aa44.63■■■■■ 4.74
LDLRAD3-203ENST00000528989 BAZ1AQ9NRL2 1556 aaPredicted RBP44.62■■■■■ 4.73
LDLRAD3-203ENST00000528989 RSF1Q96T23 1441 aaPredicted RBP44.54■■■■■ 4.72
LDLRAD3-203ENST00000528989 SMARCA4P51532 1647 aa44.53■■■■■ 4.72
LDLRAD3-203ENST00000528989 EIF4G1Q04637 1599 aaKnown RBP44.53■■■■■ 4.72
LDLRAD3-203ENST00000528989 SUPT5HO00267 1087 aaKnown RBP44.51■■■■■ 4.72
LDLRAD3-203ENST00000528989 WIZO95785 1651 aa44.19■■■■■ 4.66
LDLRAD3-203ENST00000528989 CC2D2AQ9P2K1 1620 aa44.09■■■■■ 4.65
LDLRAD3-203ENST00000528989 ATAD2BQ9ULI0 1458 aa44.08■■■■■ 4.65
LDLRAD3-203ENST00000528989 PEG3Q9GZU2 1588 aa44■■■■■ 4.63
LDLRAD3-203ENST00000528989 DNAJC5BQ9UF47 199 aa43.96■■■■■ 4.63
LDLRAD3-203ENST00000528989 SMARCA2P51531 1590 aa43.95■■■■■ 4.63
LDLRAD3-203ENST00000528989 NCAPD3P42695 1498 aa43.83■■■■■ 4.61
LDLRAD3-203ENST00000528989 BAZ1BQ9UIG0 1483 aaKnown RBP43.76■■■■■ 4.6
LDLRAD3-203ENST00000528989 TOP2AP11388 1531 aaKnown RBP43.66■■■■■ 4.58
LDLRAD3-203ENST00000528989 HMGXB3Q12766 1538 aa43.62■■■■■ 4.57
LDLRAD3-203ENST00000528989 CCDC88BA6NC98 1476 aa43.29■■■■■ 4.52
LDLRAD3-203ENST00000528989 CADPSQ9ULU8 1353 aa42.68■■■■■ 4.42
LDLRAD3-203ENST00000528989 CFTRP13569 1480 aa42.63■■■■■ 4.41
LDLRAD3-203ENST00000528989 NESP48681 1621 aa42.61■■■■■ 4.41
LDLRAD3-203ENST00000528989 LAMC3Q9Y6N6 1575 aa42.4■■■■■ 4.38
LDLRAD3-203ENST00000528989 FANCD2Q9BXW9 1451 aa42.19■■■■■ 4.34
LDLRAD3-203ENST00000528989 PRDM2Q13029 1718 aa42.16■■■■■ 4.34
LDLRAD3-203ENST00000528989 PDS5BQ9NTI5 1447 aa42.16■■■■■ 4.34
LDLRAD3-203ENST00000528989 CHIC1Q5VXU3 224 aa42.13■■■■■ 4.33
LDLRAD3-203ENST00000528989 ABCC8Q09428 1581 aa42.11■■■■■ 4.33
LDLRAD3-203ENST00000528989 CEP164Q9UPV0 1460 aa41.97■■■■■ 4.31
LDLRAD3-203ENST00000528989 KIF21AQ7Z4S6 1674 aa41.97■■■■■ 4.31
LDLRAD3-203ENST00000528989 WRNQ14191 1432 aaPredicted RBP eCLIP41.92■■■■■ 4.3
LDLRAD3-203ENST00000528989 ERCC6Q03468 1493 aa41.9■■■■■ 4.3
LDLRAD3-203ENST00000528989 TRIM41Q8WV44 630 aa41.85■■■■■ 4.29
LDLRAD3-203ENST00000528989 CUX1P39880 1505 aa41.77■■■■■ 4.28
LDLRAD3-203ENST00000528989 SYNJ1O43426 1573 aa41.76■■■■■ 4.28
LDLRAD3-203ENST00000528989 URB2Q14146 1524 aaKnown RBP41.71■■■■■ 4.27
LDLRAD3-203ENST00000528989 MRC2Q9UBG0 1479 aa41.65■■■■■ 4.26
LDLRAD3-203ENST00000528989 TOPBP1Q92547 1522 aa41.62■■■■■ 4.25
LDLRAD3-203ENST00000528989 TOP2BQ02880 1626 aa41.62■■■■■ 4.25
LDLRAD3-203ENST00000528989 DNMBPQ6XZF7 1577 aa41.58■■■■■ 4.25
LDLRAD3-203ENST00000528989 BIVM-ERCC5R4GMW8 1640 aa41.54■■■■■ 4.24
LDLRAD3-203ENST00000528989 THOC2Q8NI27 1593 aaKnown RBP41.5■■■■■ 4.23
LDLRAD3-203ENST00000528989 WDR62O43379 1518 aa41.45■■■■■ 4.23
LDLRAD3-203ENST00000528989 FGD5Q6ZNL6 1462 aa41.44■■■■■ 4.22
LDLRAD3-203ENST00000528989 POLA1P09884 1462 aaPredicted RBP41.37■■■■■ 4.21
LDLRAD3-203ENST00000528989 RAD54L2Q9Y4B4 1467 aa41.29■■■■■ 4.2
LDLRAD3-203ENST00000528989 SOGA1O94964 1423 aa41.25■■■■■ 4.19
LDLRAD3-203ENST00000528989 CUX2O14529 1486 aa41.21■■■■■ 4.19
LDLRAD3-203ENST00000528989 FAM9AQ8IZU1 332 aaPredicted RBP41.14■■■■■ 4.18
LDLRAD3-203ENST00000528989 RUSC2Q8N2Y8 1516 aa41.1■■■■■ 4.17
LDLRAD3-203ENST00000528989 TARBP1Q13395 1621 aaKnown RBP41.03■■■■■ 4.16
LDLRAD3-203ENST00000528989 ABCA10Q8WWZ4 1543 aa41.02■■■■■ 4.16
LDLRAD3-203ENST00000528989 IFT140Q96RY7 1462 aa41.01■■■■■ 4.16
LDLRAD3-203ENST00000528989 TDRD9Q8NDG6 1382 aaKnown RBP40.99■■■■■ 4.15
LDLRAD3-203ENST00000528989 KIF27Q86VH2 1401 aa40.92■■■■■ 4.14
LDLRAD3-203ENST00000528989 ZNF608Q9ULD9 1512 aaPredicted RBP40.91■■■■■ 4.14
LDLRAD3-203ENST00000528989 WDR97A6NE52 1622 aa40.89■■■■■ 4.14
LDLRAD3-203ENST00000528989 AQRO60306 1485 aaKnown RBP eCLIP40.85■■■■■ 4.13
LDLRAD3-203ENST00000528989 CSRNP3Q8WYN3 585 aa40.79■■■■■ 4.12
LDLRAD3-203ENST00000528989 EEA1Q15075 1411 aa40.78■■■■■ 4.12
LDLRAD3-203ENST00000528989 GAPVD1Q14C86 1478 aa40.76■■■■■ 4.12
LDLRAD3-203ENST00000528989 IGF1RP08069 1367 aa40.72■■■■■ 4.11
LDLRAD3-203ENST00000528989 ABCA5Q8WWZ7 1642 aa40.72■■■■■ 4.11
LDLRAD3-203ENST00000528989 EHMT2Q96KQ7 1210 aa40.66■■■■■ 4.1
LDLRAD3-203ENST00000528989 EIF4G3O43432 1585 aaKnown RBP40.64■■■■■ 4.1
LDLRAD3-203ENST00000528989 LOC105371045A0A1W2PR82 267 aa40.57■■■■■ 4.08
LDLRAD3-203ENST00000528989 GRIN2BQ13224 1484 aa40.54■■■■■ 4.08
LDLRAD3-203ENST00000528989 ERICH3Q5RHP9 1530 aa40.51■■■■■ 4.08
LDLRAD3-203ENST00000528989 CARMIL1Q5VZK9 1371 aa40.47■■■■■ 4.07
LDLRAD3-203ENST00000528989 PBRM1Q86U86 1689 aa40.47■■■■■ 4.07
LDLRAD3-203ENST00000528989 PRXQ9BXM0 1461 aa40.44■■■■■ 4.06
LDLRAD3-203ENST00000528989 SNAPC4Q5SXM2 1469 aa40.4■■■■■ 4.06
LDLRAD3-203ENST00000528989 RAPGEF2Q9Y4G8 1499 aa40.36■■■■■ 4.05
LDLRAD3-203ENST00000528989 CUL7Q14999 1698 aa40.3■■■■■ 4.04
LDLRAD3-203ENST00000528989 KIF21BO75037 1637 aa40.29■■■■■ 4.04
LDLRAD3-203ENST00000528989 FHAD1B1AJZ9 1412 aa40.28■■■■■ 4.04
LDLRAD3-203ENST00000528989 MAGI1Q96QZ7 1491 aaPredicted RBP40.26■■■■■ 4.04
LDLRAD3-203ENST00000528989 ADAMTS12P58397 1594 aa40.25■■■■■ 4.03
LDLRAD3-203ENST00000528989 UBTFP17480 764 aaKnown RBP40.23■■■■■ 4.03
LDLRAD3-203ENST00000528989 FBLN2P98095 1184 aa40.23■■■■■ 4.03
LDLRAD3-203ENST00000528989 GOLGA3Q08378 1498 aa40.22■■■■■ 4.03
LDLRAD3-203ENST00000528989 CHMP7Q8WUX9 453 aaPredicted RBP40.19■■■■■ 4.02
LDLRAD3-203ENST00000528989 SYNJ2O15056 1496 aa40.15■■■■■ 4.02
LDLRAD3-203ENST00000528989 GRIN2AQ12879 1464 aa40.05■■■■■ 4
LDLRAD3-203ENST00000528989 TNIKQ9UKE5 1360 aa39.98■■■■□ 3.99
LDLRAD3-203ENST00000528989 RANGAP1P46060 587 aaPredicted RBP39.92■■■■□ 3.98
LDLRAD3-203ENST00000528989 CHD1O14646 1710 aa39.9■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms