RNA–Protein interactions for RNA: ENST00000412104.6

VRK2-202, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best) BASIC

Gene VRK2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-202ENST00000412104 NISCHQ9Y2I1 1504 aa53.7■■■■■ 6.19
VRK2-202ENST00000412104 CCDC180Q9P1Z9 1646 aa46.39■■■■■ 5.02
VRK2-202ENST00000412104 ZCCHC6Q5VYS8 1495 aaKnown RBP45.3■■■■■ 4.84
VRK2-202ENST00000412104 SHROOM4Q9ULL8 1493 aa44.58■■■■■ 4.73
VRK2-202ENST00000412104 DCAF1Q9Y4B6 1507 aa44.31■■■■■ 4.68
VRK2-202ENST00000412104 DCAF8L2P0C7V8 631 aa44.2■■■■■ 4.67
VRK2-202ENST00000412104 MYO15BQ96JP2 1530 aa43.44■■■■■ 4.54
VRK2-202ENST00000412104 ABCC9O60706 1549 aa43.28■■■■■ 4.52
VRK2-202ENST00000412104 SUPT5HO00267 1087 aaKnown RBP43.25■■■■■ 4.51
VRK2-202ENST00000412104 NACADO15069 1562 aa43■■■■■ 4.47
VRK2-202ENST00000412104 SCRIBQ14160 1630 aa42.95■■■■■ 4.47
VRK2-202ENST00000412104 RB1CC1Q8TDY2 1594 aa42.47■■■■■ 4.39
VRK2-202ENST00000412104 RSF1Q96T23 1441 aaPredicted RBP42.01■■■■■ 4.32
VRK2-202ENST00000412104 UNC13AQ9UPW8 1703 aa41.78■■■■■ 4.28
VRK2-202ENST00000412104 CHIC1Q5VXU3 224 aa41.78■■■■■ 4.28
VRK2-202ENST00000412104 CECR2Q9BXF3 1484 aa41.75■■■■■ 4.27
VRK2-202ENST00000412104 MROH2BQ7Z745 1585 aa41.59■■■■■ 4.25
VRK2-202ENST00000412104 BAZ1AQ9NRL2 1556 aaPredicted RBP41.39■■■■■ 4.22
VRK2-202ENST00000412104 WIZO95785 1651 aa41.34■■■■■ 4.21
VRK2-202ENST00000412104 BICRAQ9NZM4 1560 aa41.25■■■■■ 4.19
VRK2-202ENST00000412104 SMARCA4P51532 1647 aa41.14■■■■■ 4.18
VRK2-202ENST00000412104 PABPN1Q86U42 306 aaKnown RBP eCLIP41■■■■■ 4.15
VRK2-202ENST00000412104 TOP2AP11388 1531 aaKnown RBP40.83■■■■■ 4.13
VRK2-202ENST00000412104 EIF4G1Q04637 1599 aaKnown RBP40.55■■■■■ 4.08
VRK2-202ENST00000412104 PEG3Q9GZU2 1588 aa40.54■■■■■ 4.08
VRK2-202ENST00000412104 TRIM41Q8WV44 630 aa40.52■■■■■ 4.08
VRK2-202ENST00000412104 SMARCA2P51531 1590 aa40.52■■■■■ 4.08
VRK2-202ENST00000412104 CCDC88BA6NC98 1476 aa40.46■■■■■ 4.07
VRK2-202ENST00000412104 LOC105371045A0A1W2PR82 267 aa40.29■■■■■ 4.04
VRK2-202ENST00000412104 ATAD2BQ9ULI0 1458 aa40.24■■■■■ 4.03
VRK2-202ENST00000412104 BAZ1BQ9UIG0 1483 aaKnown RBP40.07■■■■■ 4.01
VRK2-202ENST00000412104 ABCC8Q09428 1581 aa39.97■■■■□ 3.99
VRK2-202ENST00000412104 FAM9AQ8IZU1 332 aaPredicted RBP39.93■■■■□ 3.98
VRK2-202ENST00000412104 HMGXB3Q12766 1538 aa39.73■■■■□ 3.95
VRK2-202ENST00000412104 NCAPD3P42695 1498 aa39.69■■■■□ 3.94
VRK2-202ENST00000412104 WRNQ14191 1432 aaPredicted RBP eCLIP39.51■■■■□ 3.92
VRK2-202ENST00000412104 EHMT2Q96KQ7 1210 aa39.42■■■■□ 3.9
VRK2-202ENST00000412104 SYNJ1O43426 1573 aa39.39■■■■□ 3.9
VRK2-202ENST00000412104 SOGA1O94964 1423 aa39.36■■■■□ 3.89
VRK2-202ENST00000412104 PCGF6Q9BYE7 350 aa39.32■■■■□ 3.88
VRK2-202ENST00000412104 EEA1Q15075 1411 aa39.3■■■■□ 3.88
VRK2-202ENST00000412104 RUSC2Q8N2Y8 1516 aa39.19■■■■□ 3.86
VRK2-202ENST00000412104 CC2D2AQ9P2K1 1620 aa39.15■■■■□ 3.86
VRK2-202ENST00000412104 TOP2BQ02880 1626 aa39.1■■■■□ 3.85
VRK2-202ENST00000412104 CFTRP13569 1480 aa39.08■■■■□ 3.85
VRK2-202ENST00000412104 CSRNP3Q8WYN3 585 aa39.06■■■■□ 3.84
VRK2-202ENST00000412104 BIVM-ERCC5R4GMW8 1640 aa39.04■■■■□ 3.84
VRK2-202ENST00000412104 TRIM26Q12899 539 aaPredicted RBP39.01■■■■□ 3.83
VRK2-202ENST00000412104 PRDM2Q13029 1718 aa38.97■■■■□ 3.83
VRK2-202ENST00000412104 TNIKQ9UKE5 1360 aa38.88■■■■□ 3.82
VRK2-202ENST00000412104 GOLGA3Q08378 1498 aa38.87■■■■□ 3.81
VRK2-202ENST00000412104 CUX1P39880 1505 aa38.83■■■■□ 3.81
VRK2-202ENST00000412104 KIF21BO75037 1637 aa38.83■■■■□ 3.81
VRK2-202ENST00000412104 HRCP23327 699 aa38.81■■■■□ 3.8
VRK2-202ENST00000412104 CEP162Q5TB80 1403 aa38.81■■■■□ 3.8
VRK2-202ENST00000412104 CEP164Q9UPV0 1460 aa38.77■■■■□ 3.8
VRK2-202ENST00000412104 CADPSQ9ULU8 1353 aa38.76■■■■□ 3.8
VRK2-202ENST00000412104 UBTFP17480 764 aaKnown RBP38.69■■■■□ 3.78
VRK2-202ENST00000412104 RAPGEF2Q9Y4G8 1499 aa38.51■■■■□ 3.76
VRK2-202ENST00000412104 KIF27Q86VH2 1401 aa38.41■■■■□ 3.74
VRK2-202ENST00000412104 PPARGC1BQ86YN6 1023 aaKnown RBP38.4■■■■□ 3.74
VRK2-202ENST00000412104 ERICH3Q5RHP9 1530 aa38.39■■■■□ 3.74
VRK2-202ENST00000412104 FANCD2Q9BXW9 1451 aa38.38■■■■□ 3.73
VRK2-202ENST00000412104 PRXQ9BXM0 1461 aa38.38■■■■□ 3.73
VRK2-202ENST00000412104 CLIP1P30622 1438 aa38.3■■■■□ 3.72
VRK2-202ENST00000412104 NESP48681 1621 aa38.28■■■■□ 3.72
VRK2-202ENST00000412104 FGD5Q6ZNL6 1462 aa38.27■■■■□ 3.72
VRK2-202ENST00000412104 LAMC3Q9Y6N6 1575 aa38.22■■■■□ 3.71
VRK2-202ENST00000412104 CUX2O14529 1486 aa38.18■■■■□ 3.7
VRK2-202ENST00000412104 DNMBPQ6XZF7 1577 aa38.18■■■■□ 3.7
VRK2-202ENST00000412104 VPS8Q8N3P4 1428 aa38.07■■■■□ 3.68
VRK2-202ENST00000412104 TOPBP1Q92547 1522 aa38.07■■■■□ 3.68
VRK2-202ENST00000412104 DNAJC5BQ9UF47 199 aa38.01■■■■□ 3.68
VRK2-202ENST00000412104 IGF1RP08069 1367 aa37.99■■■■□ 3.67
VRK2-202ENST00000412104 TTBK1Q5TCY1 1321 aaPredicted RBP37.95■■■■□ 3.67
VRK2-202ENST00000412104 POLA1P09884 1462 aaPredicted RBP37.95■■■■□ 3.67
VRK2-202ENST00000412104 RANGAP1P46060 587 aaPredicted RBP37.94■■■■□ 3.66
VRK2-202ENST00000412104 ABCA10Q8WWZ4 1543 aa37.89■■■■□ 3.66
VRK2-202ENST00000412104 URB2Q14146 1524 aaKnown RBP37.89■■■■□ 3.66
VRK2-202ENST00000412104 PDS5BQ9NTI5 1447 aa37.89■■■■□ 3.66
VRK2-202ENST00000412104 RAD54L2Q9Y4B4 1467 aa37.88■■■■□ 3.66
VRK2-202ENST00000412104 ARAP1Q96P48 1450 aa37.86■■■■□ 3.65
VRK2-202ENST00000412104 KIF21AQ7Z4S6 1674 aa37.82■■■■□ 3.65
VRK2-202ENST00000412104 CARMIL1Q5VZK9 1371 aa37.82■■■■□ 3.64
VRK2-202ENST00000412104 ZEB1P37275 1124 aaPredicted RBP37.81■■■■□ 3.64
VRK2-202ENST00000412104 WDR97A6NE52 1622 aa37.75■■■■□ 3.63
VRK2-202ENST00000412104 APLP2Q06481 763 aa37.68■■■■□ 3.62
VRK2-202ENST00000412104 ARHGAP35Q9NRY4 1499 aa37.68■■■■□ 3.62
VRK2-202ENST00000412104 CUL7Q14999 1698 aa37.63■■■■□ 3.61
VRK2-202ENST00000412104 ABCA5Q8WWZ7 1642 aa37.56■■■■□ 3.6
VRK2-202ENST00000412104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.47■■■■□ 3.59
VRK2-202ENST00000412104 TARBP1Q13395 1621 aaKnown RBP37.43■■■■□ 3.58
VRK2-202ENST00000412104 TDRD9Q8NDG6 1382 aaKnown RBP37.42■■■■□ 3.58
VRK2-202ENST00000412104 GAPVD1Q14C86 1478 aa37.41■■■■□ 3.58
VRK2-202ENST00000412104 MRC2Q9UBG0 1479 aa37.4■■■■□ 3.58
VRK2-202ENST00000412104 CTTNBP2Q8WZ74 1663 aa37.39■■■■□ 3.58
VRK2-202ENST00000412104 CCER1Q8TC90 406 aaPredicted RBP37.37■■■■□ 3.57
VRK2-202ENST00000412104 KANK4Q5T7N3 995 aaPredicted RBP37.29■■■■□ 3.56
VRK2-202ENST00000412104 EFCAB5A4FU69 1503 aa37.25■■■■□ 3.55
VRK2-202ENST00000412104 PBRM1Q86U86 1689 aa37.21■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms