RNA–Protein interactions for RNA: ENST00000343053.4

NELFB-201, Transcript of negative elongation factor complex member B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NELFB, Length 2,698 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFB-201ENST00000343053 NISCHQ9Y2I1 1504 aa49.09■■■■■ 5.45
NELFB-201ENST00000343053 SHROOM4Q9ULL8 1493 aa42.62■■■■■ 4.41
NELFB-201ENST00000343053 SUPT5HO00267 1087 aaKnown RBP41.83■■■■■ 4.29
NELFB-201ENST00000343053 ZCCHC6Q5VYS8 1495 aaKnown RBP41.54■■■■■ 4.24
NELFB-201ENST00000343053 CCDC180Q9P1Z9 1646 aa41.44■■■■■ 4.22
NELFB-201ENST00000343053 DCAF8L2P0C7V8 631 aa41.25■■■■■ 4.19
NELFB-201ENST00000343053 MYO15BQ96JP2 1530 aa40.56■■■■■ 4.08
NELFB-201ENST00000343053 CHIC1Q5VXU3 224 aa40.5■■■■■ 4.07
NELFB-201ENST00000343053 DCAF1Q9Y4B6 1507 aa39.97■■■■□ 3.99
NELFB-201ENST00000343053 PCGF6Q9BYE7 350 aa39.71■■■■□ 3.95
NELFB-201ENST00000343053 HRCP23327 699 aa39.62■■■■□ 3.93
NELFB-201ENST00000343053 LOC105371045A0A1W2PR82 267 aa39.57■■■■□ 3.93
NELFB-201ENST00000343053 SCRIBQ14160 1630 aa39.34■■■■□ 3.89
NELFB-201ENST00000343053 ABCC9O60706 1549 aa39.28■■■■□ 3.88
NELFB-201ENST00000343053 PPARGC1BQ86YN6 1023 aaKnown RBP39.15■■■■□ 3.86
NELFB-201ENST00000343053 RSF1Q96T23 1441 aaPredicted RBP39.02■■■■□ 3.84
NELFB-201ENST00000343053 RB1CC1Q8TDY2 1594 aa38.81■■■■□ 3.8
NELFB-201ENST00000343053 FAM9AQ8IZU1 332 aaPredicted RBP38.76■■■■□ 3.79
NELFB-201ENST00000343053 TRIM41Q8WV44 630 aa38.73■■■■□ 3.79
NELFB-201ENST00000343053 EHMT2Q96KQ7 1210 aa38.69■■■■□ 3.78
NELFB-201ENST00000343053 TRIM26Q12899 539 aaPredicted RBP38.6■■■■□ 3.77
NELFB-201ENST00000343053 CECR2Q9BXF3 1484 aa38.51■■■■□ 3.76
NELFB-201ENST00000343053 MROH2BQ7Z745 1585 aa38.33■■■■□ 3.73
NELFB-201ENST00000343053 NACADO15069 1562 aa38.3■■■■□ 3.72
NELFB-201ENST00000343053 WIZO95785 1651 aa38.2■■■■□ 3.71
NELFB-201ENST00000343053 BAZ1AQ9NRL2 1556 aaPredicted RBP37.77■■■■□ 3.64
NELFB-201ENST00000343053 ZEB1P37275 1124 aaPredicted RBP37.67■■■■□ 3.62
NELFB-201ENST00000343053 EIF4G1Q04637 1599 aaKnown RBP37.56■■■■□ 3.6
NELFB-201ENST00000343053 ABCC8Q09428 1581 aa37.54■■■■□ 3.6
NELFB-201ENST00000343053 TTBK1Q5TCY1 1321 aaPredicted RBP37.46■■■■□ 3.59
NELFB-201ENST00000343053 SMARCA4P51532 1647 aa37.38■■■■□ 3.57
NELFB-201ENST00000343053 TOP2AP11388 1531 aaKnown RBP37.38■■■■□ 3.57
NELFB-201ENST00000343053 CCDC88BA6NC98 1476 aa37.37■■■■□ 3.57
NELFB-201ENST00000343053 UNC13AQ9UPW8 1703 aa37.35■■■■□ 3.57
NELFB-201ENST00000343053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.34■■■■□ 3.57
NELFB-201ENST00000343053 SMARCA2P51531 1590 aa37.27■■■■□ 3.56
NELFB-201ENST00000343053 PABPN1Q86U42 306 aaKnown RBP eCLIP37.21■■■■□ 3.55
NELFB-201ENST00000343053 SOGA1O94964 1423 aa37.17■■■■□ 3.54
NELFB-201ENST00000343053 CCER1Q8TC90 406 aaPredicted RBP37.14■■■■□ 3.54
NELFB-201ENST00000343053 RUSC2Q8N2Y8 1516 aa37.03■■■■□ 3.52
NELFB-201ENST00000343053 CEP162Q5TB80 1403 aa37.03■■■■□ 3.52
NELFB-201ENST00000343053 UBTFP17480 764 aaKnown RBP36.95■■■■□ 3.51
NELFB-201ENST00000343053 CSRNP3Q8WYN3 585 aa36.86■■■■□ 3.49
NELFB-201ENST00000343053 SCAF1Q9H7N4 1312 aaKnown RBP36.8■■■■□ 3.48
NELFB-201ENST00000343053 WRNQ14191 1432 aaPredicted RBP eCLIP36.79■■■■□ 3.48
NELFB-201ENST00000343053 BICRAQ9NZM4 1560 aa36.79■■■■□ 3.48
NELFB-201ENST00000343053 TNIKQ9UKE5 1360 aa36.79■■■■□ 3.48
NELFB-201ENST00000343053 EEA1Q15075 1411 aa36.62■■■■□ 3.45
NELFB-201ENST00000343053 GOLGA3Q08378 1498 aa36.59■■■■□ 3.45
NELFB-201ENST00000343053 SYNJ1O43426 1573 aa36.55■■■■□ 3.44
NELFB-201ENST00000343053 RANGAP1P46060 587 aaPredicted RBP36.52■■■■□ 3.44
NELFB-201ENST00000343053 DIEXFQ68CQ4 756 aaKnown RBP36.46■■■■□ 3.43
NELFB-201ENST00000343053 PEG3Q9GZU2 1588 aa36.42■■■■□ 3.42
NELFB-201ENST00000343053 HNRNPUL2Q1KMD3 747 aaKnown RBP36.37■■■■□ 3.41
NELFB-201ENST00000343053 ATAD2BQ9ULI0 1458 aa36.37■■■■□ 3.41
NELFB-201ENST00000343053 BAZ1BQ9UIG0 1483 aaKnown RBP36.35■■■■□ 3.41
NELFB-201ENST00000343053 CEP164Q9UPV0 1460 aa36.33■■■■□ 3.41
NELFB-201ENST00000343053 NEUROD1Q13562 356 aa36.32■■■■□ 3.41
NELFB-201ENST00000343053 CLIP1P30622 1438 aa36.28■■■■□ 3.4
NELFB-201ENST00000343053 ACIN1Q9UKV3 1341 aaKnown RBP36.24■■■■□ 3.39
NELFB-201ENST00000343053 KIF21BO75037 1637 aa36.22■■■■□ 3.39
NELFB-201ENST00000343053 RAPGEF2Q9Y4G8 1499 aa36.22■■■■□ 3.39
NELFB-201ENST00000343053 VPS8Q8N3P4 1428 aa36.07■■■■□ 3.36
NELFB-201ENST00000343053 APLP2Q06481 763 aa36.06■■■■□ 3.36
NELFB-201ENST00000343053 ZNF316A6NFI3 1004 aaPredicted RBP36.04■■■■□ 3.36
NELFB-201ENST00000343053 GTF3C3Q9Y5Q9 886 aa35.98■■■■□ 3.35
NELFB-201ENST00000343053 PELP1Q8IZL8 1130 aaKnown RBP35.96■■■■□ 3.35
NELFB-201ENST00000343053 CENPBP07199 599 aaPredicted RBP35.95■■■■□ 3.35
NELFB-201ENST00000343053 YTHDC1Q96MU7 727 aaKnown RBP35.93■■■■□ 3.34
NELFB-201ENST00000343053 TOP2BQ02880 1626 aa35.91■■■■□ 3.34
NELFB-201ENST00000343053 BIVM-ERCC5R4GMW8 1640 aa35.74■■■■□ 3.31
NELFB-201ENST00000343053 MIER1Q8N108 512 aa35.72■■■■□ 3.31
NELFB-201ENST00000343053 KANK4Q5T7N3 995 aaPredicted RBP35.66■■■■□ 3.3
NELFB-201ENST00000343053 ARAP1Q96P48 1450 aa35.64■■■■□ 3.3
NELFB-201ENST00000343053 CUX1P39880 1505 aa35.64■■■■□ 3.3
NELFB-201ENST00000343053 PRXQ9BXM0 1461 aa35.63■■■■□ 3.29
NELFB-201ENST00000343053 ERICH3Q5RHP9 1530 aa35.55■■■■□ 3.28
NELFB-201ENST00000343053 NCAPD3P42695 1498 aa35.48■■■■□ 3.27
NELFB-201ENST00000343053 HMGXB3Q12766 1538 aa35.47■■■■□ 3.27
NELFB-201ENST00000343053 KIF27Q86VH2 1401 aa35.46■■■■□ 3.27
NELFB-201ENST00000343053 ITGAEP38570 1179 aa35.44■■■■□ 3.26
NELFB-201ENST00000343053 DHX57Q6P158 1386 aaKnown RBP35.42■■■■□ 3.26
NELFB-201ENST00000343053 CFTRP13569 1480 aa35.34■■■■□ 3.25
NELFB-201ENST00000343053 ARHGAP35Q9NRY4 1499 aa35.3■■■■□ 3.24
NELFB-201ENST00000343053 CUX2O14529 1486 aa35.22■■■■□ 3.23
NELFB-201ENST00000343053 RRBP1Q9P2E9 1410 aaKnown RBP35.19■■■■□ 3.22
NELFB-201ENST00000343053 CCNB3Q8WWL7 1395 aa35.15■■■■□ 3.22
NELFB-201ENST00000343053 CLSPNQ9HAW4 1339 aa35.11■■■■□ 3.21
NELFB-201ENST00000343053 IGF1RP08069 1367 aa35.09■■■■□ 3.21
NELFB-201ENST00000343053 P3H3Q8IVL6 736 aa35.05■■■■□ 3.2
NELFB-201ENST00000343053 ATP1B4Q9UN42 357 aaPredicted RBP35.01■■■■□ 3.19
NELFB-201ENST00000343053 FGD5Q6ZNL6 1462 aa35■■■■□ 3.19
NELFB-201ENST00000343053 PRDM2Q13029 1718 aa34.99■■■■□ 3.19
NELFB-201ENST00000343053 CARMIL1Q5VZK9 1371 aa34.98■■■■□ 3.19
NELFB-201ENST00000343053 CADPSQ9ULU8 1353 aa34.95■■■■□ 3.18
NELFB-201ENST00000343053 RAB3GAP2Q9H2M9 1393 aa34.94■■■■□ 3.18
NELFB-201ENST00000343053 TIAM1Q13009 1591 aa34.91■■■■□ 3.18
NELFB-201ENST00000343053 FAM50AQ14320 339 aaKnown RBP34.89■■■■□ 3.18
NELFB-201ENST00000343053 PHLDB1Q86UU1 1377 aa34.83■■■■□ 3.17
NELFB-201ENST00000343053 LRRC9Q6ZRR7 1453 aa34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms