RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, humanhuman

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHF-208ENST00000560734 NISCHQ9Y2I1 1504 aa55.55■■■■■ 6.48
SHF-208ENST00000560734 CCDC180Q9P1Z9 1646 aa48.23■■■■■ 5.31
SHF-208ENST00000560734 ZCCHC6Q5VYS8 1495 aaKnown RBP46.8■■■■■ 5.08
SHF-208ENST00000560734 DCAF1Q9Y4B6 1507 aa46.09■■■■■ 4.97
SHF-208ENST00000560734 SHROOM4Q9ULL8 1493 aa45.45■■■■■ 4.87
SHF-208ENST00000560734 DCAF8L2P0C7V8 631 aa45.42■■■■■ 4.86
SHF-208ENST00000560734 MYO15BQ96JP2 1530 aa45.36■■■■■ 4.85
SHF-208ENST00000560734 ABCC9O60706 1549 aa44.95■■■■■ 4.79
SHF-208ENST00000560734 NACADO15069 1562 aa44.79■■■■■ 4.76
SHF-208ENST00000560734 SCRIBQ14160 1630 aa44.23■■■■■ 4.67
SHF-208ENST00000560734 RB1CC1Q8TDY2 1594 aa44.21■■■■■ 4.67
SHF-208ENST00000560734 SUPT5HO00267 1087 aaKnown RBP44.07■■■■■ 4.65
SHF-208ENST00000560734 RSF1Q96T23 1441 aaPredicted RBP43.3■■■■■ 4.52
SHF-208ENST00000560734 UNC13AQ9UPW8 1703 aa43.24■■■■■ 4.51
SHF-208ENST00000560734 CECR2Q9BXF3 1484 aa43.01■■■■■ 4.48
SHF-208ENST00000560734 BAZ1AQ9NRL2 1556 aaPredicted RBP42.87■■■■■ 4.45
SHF-208ENST00000560734 MROH2BQ7Z745 1585 aa42.87■■■■■ 4.45
SHF-208ENST00000560734 BICRAQ9NZM4 1560 aa42.82■■■■■ 4.45
SHF-208ENST00000560734 CHIC1Q5VXU3 224 aa42.65■■■■■ 4.42
SHF-208ENST00000560734 SMARCA4P51532 1647 aa42.56■■■■■ 4.4
SHF-208ENST00000560734 WIZO95785 1651 aa42.51■■■■■ 4.4
SHF-208ENST00000560734 PABPN1Q86U42 306 aaKnown RBP eCLIP42.37■■■■■ 4.37
SHF-208ENST00000560734 TOP2AP11388 1531 aaKnown RBP42.2■■■■■ 4.35
SHF-208ENST00000560734 PEG3Q9GZU2 1588 aa42.13■■■■■ 4.33
SHF-208ENST00000560734 SMARCA2P51531 1590 aa41.79■■■■■ 4.28
SHF-208ENST00000560734 CCDC88BA6NC98 1476 aa41.73■■■■■ 4.27
SHF-208ENST00000560734 ATAD2BQ9ULI0 1458 aa41.72■■■■■ 4.27
SHF-208ENST00000560734 EIF4G1Q04637 1599 aaKnown RBP41.71■■■■■ 4.27
SHF-208ENST00000560734 DNAJC5BQ9UF47 199 aa41.66■■■■■ 4.26
SHF-208ENST00000560734 TRIM41Q8WV44 630 aa41.52■■■■■ 4.24
SHF-208ENST00000560734 BAZ1BQ9UIG0 1483 aaKnown RBP41.5■■■■■ 4.23
SHF-208ENST00000560734 NCAPD3P42695 1498 aa41.34■■■■■ 4.21
SHF-208ENST00000560734 HMGXB3Q12766 1538 aa41.32■■■■■ 4.21
SHF-208ENST00000560734 ABCC8Q09428 1581 aa40.94■■■■■ 4.14
SHF-208ENST00000560734 LOC105371045A0A1W2PR82 267 aa40.9■■■■■ 4.14
SHF-208ENST00000560734 WRNQ14191 1432 aaPredicted RBP eCLIP40.74■■■■■ 4.11
SHF-208ENST00000560734 CC2D2AQ9P2K1 1620 aa40.68■■■■■ 4.1
SHF-208ENST00000560734 EEA1Q15075 1411 aa40.61■■■■■ 4.09
SHF-208ENST00000560734 FAM9AQ8IZU1 332 aaPredicted RBP40.59■■■■■ 4.09
SHF-208ENST00000560734 CFTRP13569 1480 aa40.55■■■■■ 4.08
SHF-208ENST00000560734 SYNJ1O43426 1573 aa40.48■■■■■ 4.07
SHF-208ENST00000560734 TOP2BQ02880 1626 aa40.37■■■■■ 4.05
SHF-208ENST00000560734 PRDM2Q13029 1718 aa40.36■■■■■ 4.05
SHF-208ENST00000560734 SOGA1O94964 1423 aa40.34■■■■■ 4.05
SHF-208ENST00000560734 BIVM-ERCC5R4GMW8 1640 aa40.32■■■■■ 4.05
SHF-208ENST00000560734 CADPSQ9ULU8 1353 aa40.27■■■■■ 4.04
SHF-208ENST00000560734 CSRNP3Q8WYN3 585 aa40.19■■■■■ 4.02
SHF-208ENST00000560734 RUSC2Q8N2Y8 1516 aa40.11■■■■■ 4.01
SHF-208ENST00000560734 CUX1P39880 1505 aa40.06■■■■■ 4
SHF-208ENST00000560734 TNIKQ9UKE5 1360 aa39.98■■■■□ 3.99
SHF-208ENST00000560734 KIF21BO75037 1637 aa39.96■■■■□ 3.99
SHF-208ENST00000560734 GOLGA3Q08378 1498 aa39.95■■■■□ 3.99
SHF-208ENST00000560734 CEP164Q9UPV0 1460 aa39.92■■■■□ 3.98
SHF-208ENST00000560734 EHMT2Q96KQ7 1210 aa39.85■■■■□ 3.97
SHF-208ENST00000560734 LAMC3Q9Y6N6 1575 aa39.81■■■■□ 3.96
SHF-208ENST00000560734 FANCD2Q9BXW9 1451 aa39.78■■■■□ 3.96
SHF-208ENST00000560734 CEP162Q5TB80 1403 aa39.72■■■■□ 3.95
SHF-208ENST00000560734 TRIM26Q12899 539 aaPredicted RBP39.7■■■■□ 3.95
SHF-208ENST00000560734 KIF27Q86VH2 1401 aa39.69■■■■□ 3.94
SHF-208ENST00000560734 PCGF6Q9BYE7 350 aa39.67■■■■□ 3.94
SHF-208ENST00000560734 UBTFP17480 764 aaKnown RBP39.62■■■■□ 3.93
SHF-208ENST00000560734 ERICH3Q5RHP9 1530 aa39.62■■■■□ 3.93
SHF-208ENST00000560734 PRXQ9BXM0 1461 aa39.59■■■■□ 3.93
SHF-208ENST00000560734 DNMBPQ6XZF7 1577 aa39.57■■■■□ 3.93
SHF-208ENST00000560734 NESP48681 1621 aa39.56■■■■□ 3.92
SHF-208ENST00000560734 FGD5Q6ZNL6 1462 aa39.52■■■■□ 3.92
SHF-208ENST00000560734 RAPGEF2Q9Y4G8 1499 aa39.51■■■■□ 3.92
SHF-208ENST00000560734 PDS5BQ9NTI5 1447 aa39.47■■■■□ 3.91
SHF-208ENST00000560734 TOPBP1Q92547 1522 aa39.43■■■■□ 3.9
SHF-208ENST00000560734 CUX2O14529 1486 aa39.37■■■■□ 3.89
SHF-208ENST00000560734 CLIP1P30622 1438 aa39.3■■■■□ 3.88
SHF-208ENST00000560734 ABCA10Q8WWZ4 1543 aa39.28■■■■□ 3.88
SHF-208ENST00000560734 POLA1P09884 1462 aaPredicted RBP39.26■■■■□ 3.88
SHF-208ENST00000560734 IGF1RP08069 1367 aa39.26■■■■□ 3.88
SHF-208ENST00000560734 URB2Q14146 1524 aaKnown RBP39.23■■■■□ 3.87
SHF-208ENST00000560734 HRCP23327 699 aa39.17■■■■□ 3.86
SHF-208ENST00000560734 KIF21AQ7Z4S6 1674 aa39.12■■■■□ 3.85
SHF-208ENST00000560734 VPS8Q8N3P4 1428 aa39.08■■■■□ 3.85
SHF-208ENST00000560734 RAD54L2Q9Y4B4 1467 aa39.07■■■■□ 3.84
SHF-208ENST00000560734 WDR97A6NE52 1622 aa39.05■■■■□ 3.84
SHF-208ENST00000560734 CARMIL1Q5VZK9 1371 aa39.05■■■■□ 3.84
SHF-208ENST00000560734 CUL7Q14999 1698 aa38.94■■■■□ 3.82
SHF-208ENST00000560734 MRC2Q9UBG0 1479 aa38.9■■■■□ 3.82
SHF-208ENST00000560734 ABCA5Q8WWZ7 1642 aa38.87■■■■□ 3.81
SHF-208ENST00000560734 ARAP1Q96P48 1450 aa38.83■■■■□ 3.81
SHF-208ENST00000560734 PPARGC1BQ86YN6 1023 aaKnown RBP38.8■■■■□ 3.8
SHF-208ENST00000560734 TARBP1Q13395 1621 aaKnown RBP38.8■■■■□ 3.8
SHF-208ENST00000560734 GAPVD1Q14C86 1478 aa38.74■■■■□ 3.79
SHF-208ENST00000560734 ARHGAP35Q9NRY4 1499 aa38.72■■■■□ 3.79
SHF-208ENST00000560734 ERCC6Q03468 1493 aa38.7■■■■□ 3.79
SHF-208ENST00000560734 WDR62O43379 1518 aa38.7■■■■□ 3.79
SHF-208ENST00000560734 APLP2Q06481 763 aa38.66■■■■□ 3.78
SHF-208ENST00000560734 TDRD9Q8NDG6 1382 aaKnown RBP38.63■■■■□ 3.78
SHF-208ENST00000560734 RANGAP1P46060 587 aaPredicted RBP38.6■■■■□ 3.77
SHF-208ENST00000560734 IFT140Q96RY7 1462 aa38.55■■■■□ 3.76
SHF-208ENST00000560734 ZEB1P37275 1124 aaPredicted RBP38.52■■■■□ 3.76
SHF-208ENST00000560734 CTTNBP2Q8WZ74 1663 aa38.52■■■■□ 3.76
SHF-208ENST00000560734 EFCAB5A4FU69 1503 aa38.51■■■■□ 3.75
SHF-208ENST00000560734 PBRM1Q86U86 1689 aa38.44■■■■□ 3.74
SHF-208ENST00000560734 MAP3K1Q13233 1512 aa38.42■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms