Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC29.92■■■□□ 2.38
CSMD1Q96PZ7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.68■■■□□ 2.34
CSMD1Q96PZ7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
CSMD1Q96PZ7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
CSMD1Q96PZ7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
CSMD1Q96PZ7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CSMD1Q96PZ7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CSMD1Q96PZ7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC28.49■■■□□ 2.15
CSMD1Q96PZ7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
CSMD1Q96PZ7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CSMD1Q96PZ7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
CSMD1Q96PZ7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CSMD1Q96PZ7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
CSMD1Q96PZ7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC28.18■■■□□ 2.1
CSMD1Q96PZ7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC28.04■■■□□ 2.08
CSMD1Q96PZ7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CSMD1Q96PZ7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CSMD1Q96PZ7 AL356512.1-201ENST00000607453 1739 ntBASIC27.7■■■□□ 2.02
CSMD1Q96PZ7 ZNRF2P1-201ENST00000441407 443 ntBASIC27.63■■■□□ 2.01
CSMD1Q96PZ7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
CSMD1Q96PZ7 AC006077.2-201ENST00000623591 457 ntBASIC27.6■■■□□ 2.01
CSMD1Q96PZ7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
CSMD1Q96PZ7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CSMD1Q96PZ7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
CSMD1Q96PZ7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CSMD1Q96PZ7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC27.49■■□□□ 1.99
CSMD1Q96PZ7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC27.47■■□□□ 1.99
CSMD1Q96PZ7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
CSMD1Q96PZ7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CSMD1Q96PZ7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.38■■□□□ 1.97
CSMD1Q96PZ7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC27.15■■□□□ 1.94
CSMD1Q96PZ7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
CSMD1Q96PZ7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
CSMD1Q96PZ7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CSMD1Q96PZ7 AP002365.1-201ENST00000603448 772 ntBASIC26.91■■□□□ 1.9
CSMD1Q96PZ7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC26.9■■□□□ 1.9
CSMD1Q96PZ7 AC015813.7-201ENST00000623294 581 ntBASIC26.85■■□□□ 1.89
CSMD1Q96PZ7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.81■■□□□ 1.88
CSMD1Q96PZ7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.81■■□□□ 1.88
CSMD1Q96PZ7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CSMD1Q96PZ7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.8■■□□□ 1.88
CSMD1Q96PZ7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.79■■□□□ 1.88
CSMD1Q96PZ7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
CSMD1Q96PZ7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
CSMD1Q96PZ7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.62■■□□□ 1.85
CSMD1Q96PZ7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CSMD1Q96PZ7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.54■■□□□ 1.84
CSMD1Q96PZ7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CSMD1Q96PZ7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CSMD1Q96PZ7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.38■■□□□ 1.81
CSMD1Q96PZ7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.37■■□□□ 1.81
CSMD1Q96PZ7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.37■■□□□ 1.81
CSMD1Q96PZ7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC26.33■■□□□ 1.81
CSMD1Q96PZ7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSMD1Q96PZ7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
CSMD1Q96PZ7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.8
CSMD1Q96PZ7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CSMD1Q96PZ7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CSMD1Q96PZ7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.22■■□□□ 1.79
CSMD1Q96PZ7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC26.21■■□□□ 1.79
CSMD1Q96PZ7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.2■■□□□ 1.79
CSMD1Q96PZ7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
CSMD1Q96PZ7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CSMD1Q96PZ7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
CSMD1Q96PZ7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.12■■□□□ 1.77
CSMD1Q96PZ7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CSMD1Q96PZ7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC26.1■■□□□ 1.77
CSMD1Q96PZ7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.09■■□□□ 1.77
CSMD1Q96PZ7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CSMD1Q96PZ7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.07■■□□□ 1.76
CSMD1Q96PZ7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.07■■□□□ 1.76
CSMD1Q96PZ7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CSMD1Q96PZ7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.02■■□□□ 1.76
CSMD1Q96PZ7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CSMD1Q96PZ7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.98■■□□□ 1.75
CSMD1Q96PZ7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CSMD1Q96PZ7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.95■■□□□ 1.74
CSMD1Q96PZ7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.94■■□□□ 1.74
CSMD1Q96PZ7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CSMD1Q96PZ7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CSMD1Q96PZ7 DYNLL1-208ENST00000550178 581 ntBASIC25.93■■□□□ 1.74
CSMD1Q96PZ7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CSMD1Q96PZ7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CSMD1Q96PZ7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC25.9■■□□□ 1.74
CSMD1Q96PZ7 RPS2P35-201ENST00000443417 897 ntBASIC25.88■■□□□ 1.73
CSMD1Q96PZ7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
CSMD1Q96PZ7 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.85■■□□□ 1.73
CSMD1Q96PZ7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.84■■□□□ 1.73
CSMD1Q96PZ7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC25.82■■□□□ 1.72
CSMD1Q96PZ7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
CSMD1Q96PZ7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CSMD1Q96PZ7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.79■■□□□ 1.72
CSMD1Q96PZ7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSMD1Q96PZ7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CSMD1Q96PZ7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CSMD1Q96PZ7 AC136428.2-201ENST00000563187 214 ntBASIC25.69■■□□□ 1.7
CSMD1Q96PZ7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.67■■□□□ 1.7
CSMD1Q96PZ7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.67■■□□□ 1.7
CSMD1Q96PZ7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CSMD1Q96PZ7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms