Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC25.99■■□□□ 1.75
PRKDCP78527 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
PRKDCP78527 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
PRKDCP78527 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PRKDCP78527 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PRKDCP78527 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PRKDCP78527 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PRKDCP78527 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
PRKDCP78527 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
PRKDCP78527 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC24.74■■□□□ 1.55
PRKDCP78527 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PRKDCP78527 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PRKDCP78527 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC24.5■■□□□ 1.51
PRKDCP78527 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PRKDCP78527 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
PRKDCP78527 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC24.32■■□□□ 1.48
PRKDCP78527 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRKDCP78527 ZNRF2P1-201ENST00000441407 443 ntBASIC24.09■■□□□ 1.45
PRKDCP78527 AC006077.2-201ENST00000623591 457 ntBASIC23.99■■□□□ 1.43
PRKDCP78527 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
PRKDCP78527 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PRKDCP78527 AL356512.1-201ENST00000607453 1739 ntBASIC23.92■■□□□ 1.42
PRKDCP78527 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PRKDCP78527 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PRKDCP78527 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PRKDCP78527 INO80B-203ENST00000409917 796 ntTSL 2 BASIC23.88■■□□□ 1.41
PRKDCP78527 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
PRKDCP78527 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC23.84■■□□□ 1.41
PRKDCP78527 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
PRKDCP78527 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC23.78■■□□□ 1.4
PRKDCP78527 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
PRKDCP78527 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
PRKDCP78527 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC23.41■■□□□ 1.34
PRKDCP78527 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
PRKDCP78527 AP002365.1-201ENST00000603448 772 ntBASIC23.4■■□□□ 1.34
PRKDCP78527 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC23.38■■□□□ 1.33
PRKDCP78527 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC23.36■■□□□ 1.33
PRKDCP78527 AC015813.7-201ENST00000623294 581 ntBASIC23.31■■□□□ 1.32
PRKDCP78527 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
PRKDCP78527 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
PRKDCP78527 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC23.27■■□□□ 1.32
PRKDCP78527 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PRKDCP78527 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
PRKDCP78527 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
PRKDCP78527 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PRKDCP78527 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
PRKDCP78527 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC23.11■■□□□ 1.29
PRKDCP78527 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PRKDCP78527 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PRKDCP78527 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC22.97■■□□□ 1.27
PRKDCP78527 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC22.95■■□□□ 1.26
PRKDCP78527 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.94■■□□□ 1.26
PRKDCP78527 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
PRKDCP78527 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PRKDCP78527 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PRKDCP78527 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.84■■□□□ 1.25
PRKDCP78527 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PRKDCP78527 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
PRKDCP78527 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC22.8■■□□□ 1.24
PRKDCP78527 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PRKDCP78527 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC22.78■■□□□ 1.24
PRKDCP78527 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.72■■□□□ 1.23
PRKDCP78527 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.7■■□□□ 1.22
PRKDCP78527 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PRKDCP78527 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
PRKDCP78527 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
PRKDCP78527 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PRKDCP78527 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC22.68■■□□□ 1.22
PRKDCP78527 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PRKDCP78527 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC22.66■■□□□ 1.22
PRKDCP78527 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PRKDCP78527 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.61■■□□□ 1.21
PRKDCP78527 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PRKDCP78527 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PRKDCP78527 DYNLL1-208ENST00000550178 581 ntBASIC22.58■■□□□ 1.21
PRKDCP78527 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC22.57■■□□□ 1.2
PRKDCP78527 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC22.56■■□□□ 1.2
PRKDCP78527 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC22.56■■□□□ 1.2
PRKDCP78527 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PRKDCP78527 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PRKDCP78527 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC22.54■■□□□ 1.2
PRKDCP78527 RPS2P35-201ENST00000443417 897 ntBASIC22.53■■□□□ 1.2
PRKDCP78527 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PRKDCP78527 HES6-203ENST00000409160 1600 ntTSL 2 BASIC22.51■■□□□ 1.19
PRKDCP78527 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
PRKDCP78527 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.46■■□□□ 1.19
PRKDCP78527 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PRKDCP78527 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.46■■□□□ 1.19
PRKDCP78527 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC22.43■■□□□ 1.18
PRKDCP78527 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PRKDCP78527 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.39■■□□□ 1.17
PRKDCP78527 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PRKDCP78527 AC136428.2-201ENST00000563187 214 ntBASIC22.37■■□□□ 1.17
PRKDCP78527 RARRES2P7-201ENST00000567349 469 ntBASIC22.34■■□□□ 1.17
PRKDCP78527 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.33■■□□□ 1.17
PRKDCP78527 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.33■■□□□ 1.17
PRKDCP78527 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC22.32■■□□□ 1.16
PRKDCP78527 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRKDCP78527 SUZ12P1-203ENST00000578195 985 ntBASIC22.3■■□□□ 1.16
PRKDCP78527 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms