Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC25.99■■□□□ 1.75
PRKDCP78527 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
PRKDCP78527 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
PRKDCP78527 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PRKDCP78527 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PRKDCP78527 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PRKDCP78527 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PRKDCP78527 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
PRKDCP78527 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
PRKDCP78527 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC24.74■■□□□ 1.55
PRKDCP78527 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PRKDCP78527 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PRKDCP78527 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC24.5■■□□□ 1.51
PRKDCP78527 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PRKDCP78527 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
PRKDCP78527 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC24.32■■□□□ 1.48
PRKDCP78527 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PRKDCP78527 ZNRF2P1-201ENST00000441407 443 ntBASIC24.09■■□□□ 1.45
PRKDCP78527 AC006077.2-201ENST00000623591 457 ntBASIC23.99■■□□□ 1.43
PRKDCP78527 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
PRKDCP78527 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PRKDCP78527 AL356512.1-201ENST00000607453 1739 ntBASIC23.92■■□□□ 1.42
PRKDCP78527 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PRKDCP78527 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PRKDCP78527 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PRKDCP78527 INO80B-203ENST00000409917 796 ntTSL 2 BASIC23.88■■□□□ 1.41
PRKDCP78527 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
PRKDCP78527 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC23.84■■□□□ 1.41
PRKDCP78527 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
PRKDCP78527 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC23.78■■□□□ 1.4
PRKDCP78527 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
PRKDCP78527 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
PRKDCP78527 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC23.41■■□□□ 1.34
PRKDCP78527 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
PRKDCP78527 AP002365.1-201ENST00000603448 772 ntBASIC23.4■■□□□ 1.34
PRKDCP78527 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC23.38■■□□□ 1.33
PRKDCP78527 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC23.36■■□□□ 1.33
PRKDCP78527 AC015813.7-201ENST00000623294 581 ntBASIC23.31■■□□□ 1.32
PRKDCP78527 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
PRKDCP78527 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
PRKDCP78527 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC23.27■■□□□ 1.32
PRKDCP78527 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PRKDCP78527 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
PRKDCP78527 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
PRKDCP78527 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PRKDCP78527 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
PRKDCP78527 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC23.11■■□□□ 1.29
PRKDCP78527 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PRKDCP78527 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PRKDCP78527 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC22.97■■□□□ 1.27
PRKDCP78527 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC22.95■■□□□ 1.26
PRKDCP78527 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.94■■□□□ 1.26
PRKDCP78527 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
PRKDCP78527 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PRKDCP78527 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PRKDCP78527 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.84■■□□□ 1.25
PRKDCP78527 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PRKDCP78527 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
PRKDCP78527 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC22.8■■□□□ 1.24
PRKDCP78527 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PRKDCP78527 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC22.78■■□□□ 1.24
PRKDCP78527 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.72■■□□□ 1.23
PRKDCP78527 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.7■■□□□ 1.22
PRKDCP78527 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PRKDCP78527 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
PRKDCP78527 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
PRKDCP78527 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PRKDCP78527 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC22.68■■□□□ 1.22
PRKDCP78527 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PRKDCP78527 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC22.66■■□□□ 1.22
PRKDCP78527 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PRKDCP78527 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.61■■□□□ 1.21
PRKDCP78527 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PRKDCP78527 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PRKDCP78527 DYNLL1-208ENST00000550178 581 ntBASIC22.58■■□□□ 1.21
PRKDCP78527 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC22.57■■□□□ 1.2
PRKDCP78527 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC22.56■■□□□ 1.2
PRKDCP78527 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC22.56■■□□□ 1.2
PRKDCP78527 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PRKDCP78527 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PRKDCP78527 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC22.54■■□□□ 1.2
PRKDCP78527 RPS2P35-201ENST00000443417 897 ntBASIC22.53■■□□□ 1.2
PRKDCP78527 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PRKDCP78527 HES6-203ENST00000409160 1600 ntTSL 2 BASIC22.51■■□□□ 1.19
PRKDCP78527 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
PRKDCP78527 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.46■■□□□ 1.19
PRKDCP78527 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PRKDCP78527 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.46■■□□□ 1.19
PRKDCP78527 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC22.43■■□□□ 1.18
PRKDCP78527 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PRKDCP78527 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.39■■□□□ 1.17
PRKDCP78527 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PRKDCP78527 AC136428.2-201ENST00000563187 214 ntBASIC22.37■■□□□ 1.17
PRKDCP78527 RARRES2P7-201ENST00000567349 469 ntBASIC22.34■■□□□ 1.17
PRKDCP78527 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.33■■□□□ 1.17
PRKDCP78527 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.33■■□□□ 1.17
PRKDCP78527 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC22.32■■□□□ 1.16
PRKDCP78527 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PRKDCP78527 SUZ12P1-203ENST00000578195 985 ntBASIC22.3■■□□□ 1.16
PRKDCP78527 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms