Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
PCDHGA4Q9Y5G9 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.81■■□□□ 1.56
PCDHGA4Q9Y5G9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.81■■□□□ 1.56
PCDHGA4Q9Y5G9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
PCDHGA4Q9Y5G9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHGA4Q9Y5G9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHGA4Q9Y5G9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
PCDHGA4Q9Y5G9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
PCDHGA4Q9Y5G9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDHGA4Q9Y5G9 ABCB10P3-201ENST00000561950 2166 ntBASIC24.78■■□□□ 1.56
PCDHGA4Q9Y5G9 AL139393.2-201ENST00000608721 2025 ntBASIC24.78■■□□□ 1.56
PCDHGA4Q9Y5G9 LINC00273-201ENST00000539813 1452 ntBASIC24.76■■□□□ 1.55
PCDHGA4Q9Y5G9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHGA4Q9Y5G9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHGA4Q9Y5G9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHGA4Q9Y5G9 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.75■■□□□ 1.55
PCDHGA4Q9Y5G9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
PCDHGA4Q9Y5G9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.74■■□□□ 1.55
PCDHGA4Q9Y5G9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHGA4Q9Y5G9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA4Q9Y5G9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
PCDHGA4Q9Y5G9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
PCDHGA4Q9Y5G9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.73■■□□□ 1.55
PCDHGA4Q9Y5G9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.72■■□□□ 1.55
PCDHGA4Q9Y5G9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA4Q9Y5G9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA4Q9Y5G9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHGA4Q9Y5G9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.71■■□□□ 1.55
PCDHGA4Q9Y5G9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHGA4Q9Y5G9 AP004833.2-201ENST00000532228 1454 ntBASIC24.7■■□□□ 1.55
PCDHGA4Q9Y5G9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 RARRES2P2-201ENST00000394842 485 ntBASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHGA4Q9Y5G9 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHGA4Q9Y5G9 AC135983.2-203ENST00000454486 1613 ntBASIC24.68■■□□□ 1.54
PCDHGA4Q9Y5G9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.68■■□□□ 1.54
PCDHGA4Q9Y5G9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
PCDHGA4Q9Y5G9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.68■■□□□ 1.54
PCDHGA4Q9Y5G9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
PCDHGA4Q9Y5G9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHGA4Q9Y5G9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.67■■□□□ 1.54
PCDHGA4Q9Y5G9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.66■■□□□ 1.54
PCDHGA4Q9Y5G9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
PCDHGA4Q9Y5G9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA4Q9Y5G9 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHGA4Q9Y5G9 ABHD17AP5-201ENST00000580133 923 ntBASIC24.64■■□□□ 1.54
PCDHGA4Q9Y5G9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 WHAMMP2-203ENST00000563942 1603 ntBASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.64■■□□□ 1.53
PCDHGA4Q9Y5G9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
PCDHGA4Q9Y5G9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHGA4Q9Y5G9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHGA4Q9Y5G9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.62■■□□□ 1.53
PCDHGA4Q9Y5G9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
PCDHGA4Q9Y5G9 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHGA4Q9Y5G9 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
PCDHGA4Q9Y5G9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.6■■□□□ 1.53
PCDHGA4Q9Y5G9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.6■■□□□ 1.53
PCDHGA4Q9Y5G9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 GPX1-201ENST00000419349 1106 ntBASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHGA4Q9Y5G9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA4Q9Y5G9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHGA4Q9Y5G9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms