Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC32.74■■■□□ 2.83
PCDHGA4Q9Y5G9 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
PCDHGA4Q9Y5G9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.22■■■□□ 2.75
PCDHGA4Q9Y5G9 AL356512.1-201ENST00000607453 1739 ntBASIC31.88■■■□□ 2.69
PCDHGA4Q9Y5G9 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
PCDHGA4Q9Y5G9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC31.77■■■□□ 2.68
PCDHGA4Q9Y5G9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
PCDHGA4Q9Y5G9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCDHGA4Q9Y5G9 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.41■■■□□ 2.62
PCDHGA4Q9Y5G9 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.12■■■□□ 2.57
PCDHGA4Q9Y5G9 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.01■■■□□ 2.56
PCDHGA4Q9Y5G9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.92■■■□□ 2.54
PCDHGA4Q9Y5G9 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC30.86■■■□□ 2.53
PCDHGA4Q9Y5G9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
PCDHGA4Q9Y5G9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC30.75■■■□□ 2.51
PCDHGA4Q9Y5G9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHGA4Q9Y5G9 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
PCDHGA4Q9Y5G9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
PCDHGA4Q9Y5G9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
PCDHGA4Q9Y5G9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC30.53■■■□□ 2.48
PCDHGA4Q9Y5G9 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHGA4Q9Y5G9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC30.51■■■□□ 2.47
PCDHGA4Q9Y5G9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
PCDHGA4Q9Y5G9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
PCDHGA4Q9Y5G9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
PCDHGA4Q9Y5G9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
PCDHGA4Q9Y5G9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
PCDHGA4Q9Y5G9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
PCDHGA4Q9Y5G9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
PCDHGA4Q9Y5G9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
PCDHGA4Q9Y5G9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PCDHGA4Q9Y5G9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PCDHGA4Q9Y5G9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC29.82■■■□□ 2.36
PCDHGA4Q9Y5G9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
PCDHGA4Q9Y5G9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHGA4Q9Y5G9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHGA4Q9Y5G9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.7■■■□□ 2.34
PCDHGA4Q9Y5G9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
PCDHGA4Q9Y5G9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
PCDHGA4Q9Y5G9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
PCDHGA4Q9Y5G9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
PCDHGA4Q9Y5G9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC29.6■■■□□ 2.33
PCDHGA4Q9Y5G9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.57■■■□□ 2.32
PCDHGA4Q9Y5G9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
PCDHGA4Q9Y5G9 ZNRF2P1-201ENST00000441407 443 ntBASIC29.37■■■□□ 2.29
PCDHGA4Q9Y5G9 AC006077.2-201ENST00000623591 457 ntBASIC29.36■■■□□ 2.29
PCDHGA4Q9Y5G9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.33■■■□□ 2.29
PCDHGA4Q9Y5G9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
PCDHGA4Q9Y5G9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.24■■■□□ 2.27
PCDHGA4Q9Y5G9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHGA4Q9Y5G9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.22■■■□□ 2.27
PCDHGA4Q9Y5G9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
PCDHGA4Q9Y5G9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.18■■■□□ 2.26
PCDHGA4Q9Y5G9 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PCDHGA4Q9Y5G9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.12■■■□□ 2.25
PCDHGA4Q9Y5G9 AC015813.7-201ENST00000623294 581 ntBASIC29.12■■■□□ 2.25
PCDHGA4Q9Y5G9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PCDHGA4Q9Y5G9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PCDHGA4Q9Y5G9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PCDHGA4Q9Y5G9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
PCDHGA4Q9Y5G9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.98■■■□□ 2.23
PCDHGA4Q9Y5G9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
PCDHGA4Q9Y5G9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
PCDHGA4Q9Y5G9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21
PCDHGA4Q9Y5G9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
PCDHGA4Q9Y5G9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC28.73■■■□□ 2.19
PCDHGA4Q9Y5G9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PCDHGA4Q9Y5G9 AP002365.1-201ENST00000603448 772 ntBASIC28.65■■■□□ 2.18
PCDHGA4Q9Y5G9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PCDHGA4Q9Y5G9 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
PCDHGA4Q9Y5G9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
PCDHGA4Q9Y5G9 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PCDHGA4Q9Y5G9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
PCDHGA4Q9Y5G9 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHGA4Q9Y5G9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC28.52■■■□□ 2.16
PCDHGA4Q9Y5G9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC28.49■■■□□ 2.15
PCDHGA4Q9Y5G9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PCDHGA4Q9Y5G9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
PCDHGA4Q9Y5G9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.43■■■□□ 2.14
PCDHGA4Q9Y5G9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.42■■■□□ 2.14
PCDHGA4Q9Y5G9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
PCDHGA4Q9Y5G9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHGA4Q9Y5G9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC28.41■■■□□ 2.14
PCDHGA4Q9Y5G9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC28.35■■■□□ 2.13
PCDHGA4Q9Y5G9 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
PCDHGA4Q9Y5G9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHGA4Q9Y5G9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHGA4Q9Y5G9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHGA4Q9Y5G9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.3■■■□□ 2.12
PCDHGA4Q9Y5G9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHGA4Q9Y5G9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHGA4Q9Y5G9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.27■■■□□ 2.12
PCDHGA4Q9Y5G9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHGA4Q9Y5G9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC28.24■■■□□ 2.11
PCDHGA4Q9Y5G9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PCDHGA4Q9Y5G9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCDHGA4Q9Y5G9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHGA4Q9Y5G9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.11
PCDHGA4Q9Y5G9 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHGA4Q9Y5G9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms