RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-228ENST00000617771 NISCHQ9Y2I1 1504 aa62.17■■■■■ 7.54
VEGFA-228ENST00000617771 CCDC180Q9P1Z9 1646 aa55.54■■■■■ 6.48
VEGFA-228ENST00000617771 ABCC9O60706 1549 aa54.94■■■■■ 6.39
VEGFA-228ENST00000617771 RB1CC1Q8TDY2 1594 aa52.6■■■■■ 6.01
VEGFA-228ENST00000617771 NACADO15069 1562 aa52.39■■■■■ 5.98
VEGFA-228ENST00000617771 DCAF8L2P0C7V8 631 aa52.23■■■■■ 5.95
VEGFA-228ENST00000617771 MYO15BQ96JP2 1530 aa51.88■■■■■ 5.9
VEGFA-228ENST00000617771 ZCCHC6Q5VYS8 1495 aaKnown RBP51.67■■■■■ 5.86
VEGFA-228ENST00000617771 DCAF1Q9Y4B6 1507 aa51.43■■■■■ 5.82
VEGFA-228ENST00000617771 UNC13AQ9UPW8 1703 aa51.3■■■■■ 5.8
VEGFA-228ENST00000617771 PABPN1Q86U42 306 aaKnown RBP eCLIP51.24■■■■■ 5.79
VEGFA-228ENST00000617771 BICRAQ9NZM4 1560 aa50.97■■■■■ 5.75
VEGFA-228ENST00000617771 DNAJC5BQ9UF47 199 aa50.93■■■■■ 5.74
VEGFA-228ENST00000617771 SCRIBQ14160 1630 aa50.63■■■■■ 5.7
VEGFA-228ENST00000617771 SHROOM4Q9ULL8 1493 aa50.46■■■■■ 5.67
VEGFA-228ENST00000617771 EIF4G1Q04637 1599 aaKnown RBP49.71■■■■■ 5.55
VEGFA-228ENST00000617771 CC2D2AQ9P2K1 1620 aa49.66■■■■■ 5.54
VEGFA-228ENST00000617771 CECR2Q9BXF3 1484 aa49.45■■■■■ 5.51
VEGFA-228ENST00000617771 SMARCA4P51532 1647 aa48.36■■■■■ 5.33
VEGFA-228ENST00000617771 NCAPD3P42695 1498 aa48.35■■■■■ 5.33
VEGFA-228ENST00000617771 ATAD2BQ9ULI0 1458 aa48.28■■■■■ 5.32
VEGFA-228ENST00000617771 BAZ1AQ9NRL2 1556 aaPredicted RBP48.26■■■■■ 5.32
VEGFA-228ENST00000617771 SMARCA2P51531 1590 aa48.2■■■■■ 5.31
VEGFA-228ENST00000617771 HMGXB3Q12766 1538 aa48.06■■■■■ 5.28
VEGFA-228ENST00000617771 PEG3Q9GZU2 1588 aa47.91■■■■■ 5.26
VEGFA-228ENST00000617771 MROH2BQ7Z745 1585 aa47.88■■■■■ 5.26
VEGFA-228ENST00000617771 BAZ1BQ9UIG0 1483 aaKnown RBP47.86■■■■■ 5.25
VEGFA-228ENST00000617771 ERCC6Q03468 1493 aa47.45■■■■■ 5.19
VEGFA-228ENST00000617771 NESP48681 1621 aa47.34■■■■■ 5.17
VEGFA-228ENST00000617771 WIZO95785 1651 aa47.33■■■■■ 5.17
VEGFA-228ENST00000617771 LAMC3Q9Y6N6 1575 aa47.17■■■■■ 5.14
VEGFA-228ENST00000617771 CUX2O14529 1486 aa47.16■■■■■ 5.14
VEGFA-228ENST00000617771 RSF1Q96T23 1441 aaPredicted RBP47.13■■■■■ 5.14
VEGFA-228ENST00000617771 CADPSQ9ULU8 1353 aa46.92■■■■■ 5.1
VEGFA-228ENST00000617771 PDS5BQ9NTI5 1447 aa46.91■■■■■ 5.1
VEGFA-228ENST00000617771 TOP2AP11388 1531 aaKnown RBP46.83■■■■■ 5.09
VEGFA-228ENST00000617771 THOC2Q8NI27 1593 aaKnown RBP46.76■■■■■ 5.08
VEGFA-228ENST00000617771 KIF21AQ7Z4S6 1674 aa46.75■■■■■ 5.07
VEGFA-228ENST00000617771 CFTRP13569 1480 aa46.5■■■■■ 5.03
VEGFA-228ENST00000617771 MRC2Q9UBG0 1479 aa46.44■■■■■ 5.02
VEGFA-228ENST00000617771 DNAJC5Q9H3Z4 198 aa46.41■■■■■ 5.02
VEGFA-228ENST00000617771 CEP164Q9UPV0 1460 aa46.38■■■■■ 5.02
VEGFA-228ENST00000617771 FANCD2Q9BXW9 1451 aa46.38■■■■■ 5.01
VEGFA-228ENST00000617771 WDR62O43379 1518 aa46.29■■■■■ 5
VEGFA-228ENST00000617771 CCDC88BA6NC98 1476 aa46.27■■■■■ 5
VEGFA-228ENST00000617771 PRDM2Q13029 1718 aa46.06■■■■■ 4.96
VEGFA-228ENST00000617771 URB2Q14146 1524 aaKnown RBP45.93■■■■■ 4.94
VEGFA-228ENST00000617771 ABCC8Q09428 1581 aa45.55■■■■■ 4.88
VEGFA-228ENST00000617771 TOPBP1Q92547 1522 aa45.55■■■■■ 4.88
VEGFA-228ENST00000617771 SUPT5HO00267 1087 aaKnown RBP45.5■■■■■ 4.87
VEGFA-228ENST00000617771 DNMBPQ6XZF7 1577 aa45.45■■■■■ 4.87
VEGFA-228ENST00000617771 IFT140Q96RY7 1462 aa45.44■■■■■ 4.87
VEGFA-228ENST00000617771 ZNF608Q9ULD9 1512 aaPredicted RBP45.25■■■■■ 4.83
VEGFA-228ENST00000617771 POLA1P09884 1462 aaPredicted RBP45.12■■■■■ 4.81
VEGFA-228ENST00000617771 OSCARQ8IYS5 282 aa45.1■■■■■ 4.81
VEGFA-228ENST00000617771 TARBP1Q13395 1621 aaKnown RBP45.08■■■■■ 4.81
VEGFA-228ENST00000617771 EIF4G3O43432 1585 aaKnown RBP45.05■■■■■ 4.8
VEGFA-228ENST00000617771 CUX1P39880 1505 aa44.96■■■■■ 4.79
VEGFA-228ENST00000617771 SOGA1O94964 1423 aa44.94■■■■■ 4.79
VEGFA-228ENST00000617771 FGD5Q6ZNL6 1462 aa44.93■■■■■ 4.78
VEGFA-228ENST00000617771 AQRO60306 1485 aaKnown RBP eCLIP44.92■■■■■ 4.781e-8■■■■■ 26.8
VEGFA-228ENST00000617771 RAD54L2Q9Y4B4 1467 aa44.92■■■■■ 4.78
VEGFA-228ENST00000617771 TDRD9Q8NDG6 1382 aaKnown RBP44.75■■■■■ 4.75
VEGFA-228ENST00000617771 WDR97A6NE52 1622 aa44.74■■■■■ 4.75
VEGFA-228ENST00000617771 TRIM41Q8WV44 630 aa44.64■■■■■ 4.74
VEGFA-228ENST00000617771 CHD1O14646 1710 aa44.57■■■■■ 4.73
VEGFA-228ENST00000617771 FBLN2P98095 1184 aa44.55■■■■■ 4.72
VEGFA-228ENST00000617771 SNAPC4Q5SXM2 1469 aa44.52■■■■■ 4.72
VEGFA-228ENST00000617771 GRIN2BQ13224 1484 aa44.5■■■■■ 4.71
VEGFA-228ENST00000617771 WRNQ14191 1432 aaPredicted RBP eCLIP44.49■■■■■ 4.711e-6■■■■□ 26.4
VEGFA-228ENST00000617771 ABCA10Q8WWZ4 1543 aa44.47■■■■■ 4.71
VEGFA-228ENST00000617771 MAGI1Q96QZ7 1491 aaPredicted RBP44.45■■■■■ 4.71
VEGFA-228ENST00000617771 TOP2BQ02880 1626 aa44.42■■■■■ 4.7
VEGFA-228ENST00000617771 BIVM-ERCC5R4GMW8 1640 aa44.42■■■■■ 4.7
VEGFA-228ENST00000617771 GAPVD1Q14C86 1478 aa44.41■■■■■ 4.7
VEGFA-228ENST00000617771 RIMBP3CA6NJZ7 1639 aa44.39■■■■■ 4.7
VEGFA-228ENST00000617771 RIMBP3BA6NNM3 1639 aa44.39■■■■■ 4.7
VEGFA-228ENST00000617771 RIMBP3Q9UFD9 1639 aa44.39■■■■■ 4.7
VEGFA-228ENST00000617771 SYNJ1O43426 1573 aa44.37■■■■■ 4.69
VEGFA-228ENST00000617771 ARHGEF11O15085 1522 aa44.34■■■■■ 4.69
VEGFA-228ENST00000617771 CHMP7Q8WUX9 453 aaPredicted RBP44.34■■■■■ 4.69
VEGFA-228ENST00000617771 PBRM1Q86U86 1689 aa44.32■■■■■ 4.69
VEGFA-228ENST00000617771 ABCA5Q8WWZ7 1642 aa44.32■■■■■ 4.69
VEGFA-228ENST00000617771 SYNJ2O15056 1496 aa44.28■■■■■ 4.68
VEGFA-228ENST00000617771 CLASP1Q7Z460 1538 aa44.11■■■■■ 4.65
VEGFA-228ENST00000617771 CYB5RLQ6IPT4 315 aa43.98■■■■■ 4.63
VEGFA-228ENST00000617771 ADAMTS12P58397 1594 aa43.96■■■■■ 4.63
VEGFA-228ENST00000617771 ERICH3Q5RHP9 1530 aa43.94■■■■■ 4.63
VEGFA-228ENST00000617771 ARAP1Q96P48 1450 aa43.94■■■■■ 4.62
VEGFA-228ENST00000617771 GRIN2AQ12879 1464 aa43.91■■■■■ 4.62
VEGFA-228ENST00000617771 FHAD1B1AJZ9 1412 aa43.89■■■■■ 4.62
VEGFA-228ENST00000617771 NUP160Q12769 1436 aa43.74■■■■■ 4.59
VEGFA-228ENST00000617771 CEP170Q5SW79 1584 aa43.7■■■■■ 4.59
VEGFA-228ENST00000617771 KIF27Q86VH2 1401 aa43.62■■■■■ 4.57
VEGFA-228ENST00000617771 IGF1RP08069 1367 aa43.49■■■■■ 4.55
VEGFA-228ENST00000617771 SHROOM2Q13796 1616 aa43.45■■■■■ 4.55
VEGFA-228ENST00000617771 CUL7Q14999 1698 aa43.42■■■■■ 4.54
VEGFA-228ENST00000617771 ERCC6L2Q5T890 1561 aa43.41■■■■■ 4.54
VEGFA-228ENST00000617771 TRHP20396 242 aaPredicted RBP43.33■■■■■ 4.53
VEGFA-228ENST00000617771 RUSC2Q8N2Y8 1516 aa43.32■■■■■ 4.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms