RNA–Protein interactions for RNA: ENST00000519445.5

KCNQ3-202, Transcript of potassium voltage-gated channel subfamily Q member 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene KCNQ3, Length 2,801 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNQ3-202ENST00000519445 NISCHQ9Y2I1 1504 aa48.09■■■■■ 5.29
KCNQ3-202ENST00000519445 SHROOM4Q9ULL8 1493 aa41.66■■■■■ 4.26
KCNQ3-202ENST00000519445 DCAF8L2P0C7V8 631 aa40.97■■■■■ 4.15
KCNQ3-202ENST00000519445 SUPT5HO00267 1087 aaKnown RBP40.66■■■■■ 4.1
KCNQ3-202ENST00000519445 CCDC180Q9P1Z9 1646 aa40.6■■■■■ 4.09
KCNQ3-202ENST00000519445 ZCCHC6Q5VYS8 1495 aaKnown RBP40.53■■■■■ 4.08
KCNQ3-202ENST00000519445 DCAF1Q9Y4B6 1507 aa39.01■■■■□ 3.84
KCNQ3-202ENST00000519445 CHIC1Q5VXU3 224 aa39.01■■■■□ 3.84
KCNQ3-202ENST00000519445 HRCP23327 699 aa38.86■■■■□ 3.81
KCNQ3-202ENST00000519445 MYO15BQ96JP2 1530 aa38.85■■■■□ 3.81
KCNQ3-202ENST00000519445 ABCC9O60706 1549 aa38.78■■■■□ 3.8
KCNQ3-202ENST00000519445 SCRIBQ14160 1630 aa38.71■■■■□ 3.79
KCNQ3-202ENST00000519445 PPARGC1BQ86YN6 1023 aaKnown RBP38.44■■■■□ 3.74
KCNQ3-202ENST00000519445 PELP1Q8IZL8 1130 aaKnown RBP38.28■■■■□ 3.72
KCNQ3-202ENST00000519445 LOC105371045A0A1W2PR82 267 aa38.23■■■■□ 3.71
KCNQ3-202ENST00000519445 RSF1Q96T23 1441 aaPredicted RBP38.11■■■■□ 3.69
KCNQ3-202ENST00000519445 PCGF6Q9BYE7 350 aa38.01■■■■□ 3.67
KCNQ3-202ENST00000519445 CECR2Q9BXF3 1484 aa37.9■■■■□ 3.66
KCNQ3-202ENST00000519445 EHMT2Q96KQ7 1210 aa37.8■■■■□ 3.64
KCNQ3-202ENST00000519445 NACADO15069 1562 aa37.78■■■■□ 3.64
KCNQ3-202ENST00000519445 FAM9AQ8IZU1 332 aaPredicted RBP37.74■■■■□ 3.63
KCNQ3-202ENST00000519445 RB1CC1Q8TDY2 1594 aa37.73■■■■□ 3.63
KCNQ3-202ENST00000519445 TRIM41Q8WV44 630 aa37.6■■■■□ 3.61
KCNQ3-202ENST00000519445 MROH2BQ7Z745 1585 aa37.59■■■■□ 3.61
KCNQ3-202ENST00000519445 WIZO95785 1651 aa37.38■■■■□ 3.57
KCNQ3-202ENST00000519445 SCAF1Q9H7N4 1312 aaKnown RBP37.34■■■■□ 3.57
KCNQ3-202ENST00000519445 PABPN1Q86U42 306 aaKnown RBP eCLIP37.31■■■■□ 3.56
KCNQ3-202ENST00000519445 UNC13AQ9UPW8 1703 aa36.88■■■■□ 3.49
KCNQ3-202ENST00000519445 MYT1Q01538 1121 aa36.86■■■■□ 3.49
KCNQ3-202ENST00000519445 BAZ1AQ9NRL2 1556 aaPredicted RBP36.86■■■■□ 3.49
KCNQ3-202ENST00000519445 TRIM26Q12899 539 aaPredicted RBP36.69■■■■□ 3.46
KCNQ3-202ENST00000519445 SMARCA4P51532 1647 aa36.67■■■■□ 3.46
KCNQ3-202ENST00000519445 CCDC88BA6NC98 1476 aa36.6■■■■□ 3.45
KCNQ3-202ENST00000519445 ABCC8Q09428 1581 aa36.6■■■■□ 3.45
KCNQ3-202ENST00000519445 BICRAQ9NZM4 1560 aa36.49■■■■□ 3.43
KCNQ3-202ENST00000519445 TOP2AP11388 1531 aaKnown RBP36.48■■■■□ 3.43
KCNQ3-202ENST00000519445 TTBK1Q5TCY1 1321 aaPredicted RBP36.4■■■■□ 3.42
KCNQ3-202ENST00000519445 SMARCA2P51531 1590 aa36.39■■■■□ 3.42
KCNQ3-202ENST00000519445 EIF4G1Q04637 1599 aaKnown RBP36.38■■■■□ 3.41
KCNQ3-202ENST00000519445 SOGA1O94964 1423 aa36.22■■■■□ 3.39
KCNQ3-202ENST00000519445 RUSC2Q8N2Y8 1516 aa36.13■■■■□ 3.37
KCNQ3-202ENST00000519445 NEUROD1Q13562 356 aa36.08■■■■□ 3.37
KCNQ3-202ENST00000519445 ACIN1Q9UKV3 1341 aaKnown RBP36.06■■■■□ 3.36
KCNQ3-202ENST00000519445 ZEB1P37275 1124 aaPredicted RBP36.03■■■■□ 3.36
KCNQ3-202ENST00000519445 GTF3C3Q9Y5Q9 886 aa35.98■■■■□ 3.35
KCNQ3-202ENST00000519445 UBTFP17480 764 aaKnown RBP35.98■■■■□ 3.35
KCNQ3-202ENST00000519445 ATAD2BQ9ULI0 1458 aa35.91■■■■□ 3.34
KCNQ3-202ENST00000519445 CSRNP3Q8WYN3 585 aa35.87■■■■□ 3.33
KCNQ3-202ENST00000519445 RANGAP1P46060 587 aaPredicted RBP35.86■■■■□ 3.33
KCNQ3-202ENST00000519445 BAZ1BQ9UIG0 1483 aaKnown RBP35.83■■■■□ 3.33
KCNQ3-202ENST00000519445 WRNQ14191 1432 aaPredicted RBP eCLIP35.8■■■■□ 3.32
KCNQ3-202ENST00000519445 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.76■■■■□ 3.31
KCNQ3-202ENST00000519445 CEP162Q5TB80 1403 aa35.73■■■■□ 3.31
KCNQ3-202ENST00000519445 PEG3Q9GZU2 1588 aa35.68■■■■□ 3.3
KCNQ3-202ENST00000519445 SYNJ1O43426 1573 aa35.65■■■■□ 3.3
KCNQ3-202ENST00000519445 TNIKQ9UKE5 1360 aa35.51■■■■□ 3.27
KCNQ3-202ENST00000519445 CENPBP07199 599 aaPredicted RBP35.45■■■■□ 3.27
KCNQ3-202ENST00000519445 CCER1Q8TC90 406 aaPredicted RBP35.45■■■■□ 3.27
KCNQ3-202ENST00000519445 GOLGA3Q08378 1498 aa35.37■■■■□ 3.25
KCNQ3-202ENST00000519445 EEA1Q15075 1411 aa35.35■■■■□ 3.25
KCNQ3-202ENST00000519445 RAPGEF2Q9Y4G8 1499 aa35.25■■■■□ 3.23
KCNQ3-202ENST00000519445 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
KCNQ3-202ENST00000519445 HNRNPUL2Q1KMD3 747 aaKnown RBP35.14■■■■□ 3.22
KCNQ3-202ENST00000519445 DIEXFQ68CQ4 756 aaKnown RBP35.14■■■■□ 3.22
KCNQ3-202ENST00000519445 CLIP1P30622 1438 aa35.13■■■■□ 3.21
KCNQ3-202ENST00000519445 NCAPD3P42695 1498 aa35.1■■■■□ 3.21
KCNQ3-202ENST00000519445 TOP2BQ02880 1626 aa35■■■■□ 3.19
KCNQ3-202ENST00000519445 YTHDC1Q96MU7 727 aaKnown RBP35■■■■□ 3.19
KCNQ3-202ENST00000519445 CUX1P39880 1505 aa34.95■■■■□ 3.19
KCNQ3-202ENST00000519445 KIF21BO75037 1637 aa34.94■■■■□ 3.18
KCNQ3-202ENST00000519445 BCL11AQ9H165 835 aa34.93■■■■□ 3.18
KCNQ3-202ENST00000519445 HMGXB3Q12766 1538 aa34.92■■■■□ 3.18
KCNQ3-202ENST00000519445 APLP2Q06481 763 aa34.9■■■■□ 3.18
KCNQ3-202ENST00000519445 CFTRP13569 1480 aa34.81■■■■□ 3.16
KCNQ3-202ENST00000519445 VPS8Q8N3P4 1428 aa34.79■■■■□ 3.16
KCNQ3-202ENST00000519445 BIVM-ERCC5R4GMW8 1640 aa34.76■■■■□ 3.16
KCNQ3-202ENST00000519445 KANK4Q5T7N3 995 aaPredicted RBP34.69■■■■□ 3.14
KCNQ3-202ENST00000519445 PRXQ9BXM0 1461 aa34.66■■■■□ 3.14
KCNQ3-202ENST00000519445 KIF27Q86VH2 1401 aa34.65■■■■□ 3.14
KCNQ3-202ENST00000519445 CC2D2AQ9P2K1 1620 aa34.6■■■■□ 3.13
KCNQ3-202ENST00000519445 CADPSQ9ULU8 1353 aa34.6■■■■□ 3.13
KCNQ3-202ENST00000519445 DNAJC5BQ9UF47 199 aa34.59■■■■□ 3.13
KCNQ3-202ENST00000519445 CUX2O14529 1486 aa34.57■■■■□ 3.13
KCNQ3-202ENST00000519445 ARAP1Q96P48 1450 aa34.54■■■■□ 3.12
KCNQ3-202ENST00000519445 P3H3Q8IVL6 736 aa34.51■■■■□ 3.12
KCNQ3-202ENST00000519445 ITGAEP38570 1179 aa34.49■■■■□ 3.11
KCNQ3-202ENST00000519445 NESP48681 1621 aa34.47■■■■□ 3.11
KCNQ3-202ENST00000519445 IGF1RP08069 1367 aa34.43■■■■□ 3.1
KCNQ3-202ENST00000519445 FGD5Q6ZNL6 1462 aa34.43■■■■□ 3.1
KCNQ3-202ENST00000519445 ERICH3Q5RHP9 1530 aa34.41■■■■□ 3.1
KCNQ3-202ENST00000519445 ATP1B4Q9UN42 357 aaPredicted RBP34.38■■■■□ 3.09
KCNQ3-202ENST00000519445 ANP32EQ9BTT0 268 aa34.37■■■■□ 3.09
KCNQ3-202ENST00000519445 RAD54L2Q9Y4B4 1467 aa34.33■■■■□ 3.09
KCNQ3-202ENST00000519445 ARHGAP35Q9NRY4 1499 aa34.32■■■■□ 3.08
KCNQ3-202ENST00000519445 FANCD2Q9BXW9 1451 aa34.31■■■■□ 3.08
KCNQ3-202ENST00000519445 CARMIL1Q5VZK9 1371 aa34.3■■■■□ 3.08
KCNQ3-202ENST00000519445 MIER1Q8N108 512 aa34.23■■■■□ 3.07
KCNQ3-202ENST00000519445 ZNF316A6NFI3 1004 aaPredicted RBP34.18■■■■□ 3.06
KCNQ3-202ENST00000519445 PRDM2Q13029 1718 aa34.13■■■■□ 3.05
KCNQ3-202ENST00000519445 POLA1P09884 1462 aaPredicted RBP34.03■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms