Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.192e-7■□□□□ 9.7
U2AF1Q01081 RBM39-212ENST00000429968 2149 ntTSL 218.24■□□□□ 0.518e-22■□□□□ 9.7
U2AF1Q01081 RBM39-216ENST00000444878 2124 ntTSL 217.92■□□□□ 0.468e-22■□□□□ 9.7
U2AF1Q01081 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC16.49■□□□□ 0.238e-22■□□□□ 9.7
U2AF1Q01081 RBM39-245ENST00000639702 5914 ntTSL 515.48■□□□□ 0.078e-22■□□□□ 9.7
U2AF1Q01081 RBM39-206ENST00000403542 2883 ntTSL 215.41■□□□□ 0.068e-22■□□□□ 9.7
U2AF1Q01081 RBM39-223ENST00000463004 4580 ntTSL 515.22■□□□□ 0.038e-22■□□□□ 9.7
U2AF1Q01081 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.028e-22■□□□□ 9.7
U2AF1Q01081 RBM39-202ENST00000338163 2792 ntTSL 214.83□□□□□ -0.048e-22■□□□□ 9.7
U2AF1Q01081 PNISR-204ENST00000463021 1939 ntTSL 1 (best)4.69□□□□□ -1.663e-13■□□□□ 9.7
U2AF1Q01081 SDHAP1-205ENST00000427841 2491 ntTSL 222■■□□□ 1.113e-7■□□□□ 9.6
U2AF1Q01081 SDHAP1-203ENST00000427149 706 ntTSL 5 BASIC12.88□□□□□ -0.353e-7■□□□□ 9.6
U2AF1Q01081 TTC1-205ENST00000522793 1432 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.332e-8■□□□□ 9.6
U2AF1Q01081 TTC1-201ENST00000231238 1467 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.352e-8■□□□□ 9.6
U2AF1Q01081 DEK-207ENST00000515742 661 ntTSL 231■■■□□ 2.554e-10■□□□□ 9.6
U2AF1Q01081 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.99■□□□□ 0.954e-10■□□□□ 9.6
U2AF1Q01081 DEK-204ENST00000505224 1372 ntTSL 218.47■□□□□ 0.554e-10■□□□□ 9.6
U2AF1Q01081 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.534e-10■□□□□ 9.6
U2AF1Q01081 DEK-203ENST00000503715 580 ntTSL 517.46■□□□□ 0.394e-10■□□□□ 9.6
U2AF1Q01081 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC8.51□□□□□ -1.057e-6■□□□□ 9.6
U2AF1Q01081 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.527e-6■□□□□ 9.6
U2AF1Q01081 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.827e-6■□□□□ 9.6
U2AF1Q01081 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.66□□□□□ -1.987e-6■□□□□ 9.6
U2AF1Q01081 CTTN-204ENST00000393747 1315 ntTSL 524.11■■□□□ 1.451e-7■□□□□ 9.6
U2AF1Q01081 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC23.35■■□□□ 1.331e-7■□□□□ 9.6
U2AF1Q01081 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.781e-7■□□□□ 9.6
U2AF1Q01081 CTTN-213ENST00000529736 952 ntTSL 318.99■□□□□ 0.631e-7■□□□□ 9.6
U2AF1Q01081 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.371e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.63e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-214ENST00000508183 1410 ntTSL 1 (best)24.98■■□□□ 1.593e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-211ENST00000569914 768 ntTSL 323.57■■□□□ 1.363e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.353e-7■□□□□ 9.6
U2AF1Q01081 AARS-207ENST00000569825 871 ntTSL 222.89■■□□□ 1.253e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-210ENST00000569683 905 ntTSL 322.75■■□□□ 1.233e-7■□□□□ 9.6
U2AF1Q01081 TRAPPC12-209ENST00000441099 698 ntTSL 321.34■■□□□ 1.013e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-223ENST00000513495 600 ntTSL 421■□□□□ 0.953e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-220ENST00000511002 1124 ntTSL 520.73■□□□□ 0.913e-7■□□□□ 9.6
U2AF1Q01081 GSE1-209ENST00000479488 649 ntTSL 220.67■□□□□ 0.93e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-210ENST00000506360 5829 ntTSL 220.55■□□□□ 0.883e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-212ENST00000507801 538 ntTSL 419.82■□□□□ 0.763e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-206ENST00000502669 3484 ntTSL 1 (best)19.46■□□□□ 0.713e-7■□□□□ 9.6
U2AF1Q01081 GSE1-205ENST00000412692 6625 ntTSL 519.27■□□□□ 0.683e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-203ENST00000563853 1025 ntTSL 318.71■□□□□ 0.593e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-204ENST00000502350 2258 ntTSL 218.13■□□□□ 0.493e-7■□□□□ 9.6
U2AF1Q01081 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.433e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-225ENST00000515682 4293 ntTSL 217.16■□□□□ 0.343e-7■□□□□ 9.6
U2AF1Q01081 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.33e-7■□□□□ 9.6
U2AF1Q01081 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.293e-7■□□□□ 9.6
U2AF1Q01081 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.233e-7■□□□□ 9.6
U2AF1Q01081 ERBB3-216ENST00000550869 572 ntTSL 416.06■□□□□ 0.163e-9■□□□□ 9.6
U2AF1Q01081 SH3TC1-205ENST00000502559 3798 ntTSL 216.06■□□□□ 0.163e-7■□□□□ 9.6
U2AF1Q01081 ERBB3-210ENST00000549472 519 ntTSL 515.68■□□□□ 0.13e-9■□□□□ 9.6
U2AF1Q01081 GSE1-207ENST00000469381 5885 ntTSL 214.86□□□□□ -0.033e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-205ENST00000566026 525 ntTSL 311.68□□□□□ -0.543e-7■□□□□ 9.6
U2AF1Q01081 C16orf70-209ENST00000569626 2835 ntTSL 29.16□□□□□ -0.943e-7■□□□□ 9.6
U2AF1Q01081 TCF25-213ENST00000564957 459 ntTSL 324.84■■□□□ 1.571e-8■□□□□ 9.6
U2AF1Q01081 TCF25-218ENST00000566283 515 ntTSL 224.84■■□□□ 1.571e-8■□□□□ 9.6
U2AF1Q01081 TCF25-220ENST00000567171 1535 ntTSL 222.38■■□□□ 1.171e-8■□□□□ 9.6
U2AF1Q01081 CDK5RAP3-213ENST00000579605 560 ntTSL 417.52■□□□□ 0.41e-8■□□□□ 9.6
U2AF1Q01081 CDK5RAP3-222ENST00000581708 543 ntTSL 416.82■□□□□ 0.281e-8■□□□□ 9.6
U2AF1Q01081 KIF13A-210ENST00000506044 810 ntTSL 415.78■□□□□ 0.121e-8■□□□□ 9.6
U2AF1Q01081 CDK5RAP3-214ENST00000579632 738 ntTSL 414.03□□□□□ -0.161e-8■□□□□ 9.6
U2AF1Q01081 KIF13A-206ENST00000502297 4009 ntTSL 59.96□□□□□ -0.811e-8■□□□□ 9.6
U2AF1Q01081 KIF13A-202ENST00000358380 4200 ntTSL 1 (best)9.43□□□□□ -0.91e-8■□□□□ 9.6
U2AF1Q01081 RBM39-215ENST00000442447 644 ntTSL 221.69■■□□□ 1.064e-22■□□□□ 9.6
U2AF1Q01081 RBM39-205ENST00000397370 612 ntTSL 2 BASIC21.57■■□□□ 1.044e-22■□□□□ 9.6
U2AF1Q01081 RBM39-204ENST00000374038 1026 ntTSL 520.96■□□□□ 0.954e-22■□□□□ 9.6
U2AF1Q01081 RBM39-219ENST00000453310 1068 ntTSL 220.96■□□□□ 0.954e-22■□□□□ 9.6
U2AF1Q01081 RBM39-213ENST00000433027 611 ntTSL 520.4■□□□□ 0.864e-22■□□□□ 9.6
U2AF1Q01081 RBM39-224ENST00000463098 869 ntTSL 219.76■□□□□ 0.752e-33■□□□□ 9.6
U2AF1Q01081 RBM39-207ENST00000412738 1018 ntTSL 318.41■□□□□ 0.544e-22■□□□□ 9.6
U2AF1Q01081 RBM39-222ENST00000461849 861 ntTSL 218.41■□□□□ 0.542e-33■□□□□ 9.6
U2AF1Q01081 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.131e-6■□□□□ 9.6
U2AF1Q01081 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC11.6□□□□□ -0.551e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC18.74■□□□□ 0.595e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.225e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.65e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-204ENST00000417196 811 ntTSL 59.98□□□□□ -0.815e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-207ENST00000434241 476 ntTSL 59.96□□□□□ -0.825e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-214ENST00000465558 1688 ntTSL 29.78□□□□□ -0.845e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC9.36□□□□□ -0.915e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-218ENST00000480472 765 ntTSL 49.09□□□□□ -0.955e-6■□□□□ 9.6
U2AF1Q01081 TTLL4-215ENST00000467841 973 ntTSL 48.93□□□□□ -0.985e-6■□□□□ 9.6
U2AF1Q01081 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)22.46■■□□□ 1.191e-8■□□□□ 9.6
U2AF1Q01081 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.11e-8■□□□□ 9.6
U2AF1Q01081 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.941e-8■□□□□ 9.6
U2AF1Q01081 NUP35-209ENST00000479162 2828 ntTSL 212.25□□□□□ -0.451e-8■□□□□ 9.6
U2AF1Q01081 NUP35-202ENST00000374930 998 ntTSL 210.05□□□□□ -0.81e-8■□□□□ 9.6
U2AF1Q01081 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.18□□□□□ -1.581e-8■□□□□ 9.6
U2AF1Q01081 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.591e-8■□□□□ 9.6
U2AF1Q01081 HGD-204ENST00000475447 565 ntTSL 310.09□□□□□ -0.798e-7■□□□□ 9.5
U2AF1Q01081 HGD-210ENST00000494453 683 ntTSL 38.1□□□□□ -1.118e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC26.77■■□□□ 1.882e-7■□□□□ 9.5
U2AF1Q01081 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC21.78■■□□□ 1.082e-7■□□□□ 9.5
U2AF1Q01081 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.822e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.682e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-205ENST00000581166 1401 ntTSL 218.81■□□□□ 0.62e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-203ENST00000579289 318 ntTSL 314.87□□□□□ -0.032e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-204ENST00000580947 574 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.142e-7■□□□□ 9.5
U2AF1Q01081 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC9.77□□□□□ -0.852e-7■□□□□ 9.5
Retrieved 100 of 10,096 protein–RNA pairs in 1353.8 ms