RNA–Protein interactions for RNA: ENST00000444878.5

RBM39-216, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-216ENST00000444878 NISCHQ9Y2I1 1504 aa29.85■■■□□ 2.37
RBM39-216ENST00000444878 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
RBM39-216ENST00000444878 ZCCHC6Q5VYS8 1495 aaKnown RBP25.15■■□□□ 1.62
RBM39-216ENST00000444878 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
RBM39-216ENST00000444878 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
RBM39-216ENST00000444878 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
RBM39-216ENST00000444878 MYO15BQ96JP2 1530 aa24.14■■□□□ 1.45
RBM39-216ENST00000444878 ABCC9O60706 1549 aa24.11■■□□□ 1.45
RBM39-216ENST00000444878 SUPT5HO00267 1087 aaKnown RBP24.1■■□□□ 1.45
RBM39-216ENST00000444878 NACADO15069 1562 aa23.93■■□□□ 1.42
RBM39-216ENST00000444878 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
RBM39-216ENST00000444878 RB1CC1Q8TDY2 1594 aa23.64■■□□□ 1.38
RBM39-216ENST00000444878 RSF1Q96T23 1441 aaPredicted RBP23.34■■□□□ 1.33
RBM39-216ENST00000444878 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
RBM39-216ENST00000444878 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
RBM39-216ENST00000444878 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.31
RBM39-216ENST00000444878 MROH2BQ7Z745 1585 aa23.11■■□□□ 1.29
RBM39-216ENST00000444878 BAZ1AQ9NRL2 1556 aaPredicted RBP23.02■■□□□ 1.28
RBM39-216ENST00000444878 WIZO95785 1651 aa22.98■■□□□ 1.27
RBM39-216ENST00000444878 BICRAQ9NZM4 1560 aa22.93■■□□□ 1.26
RBM39-216ENST00000444878 SMARCA4P51532 1647 aa22.87■■□□□ 1.25
RBM39-216ENST00000444878 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.251e-8■□□□□ 10.4
RBM39-216ENST00000444878 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
RBM39-216ENST00000444878 TRIM41Q8WV44 630 aa22.58■■□□□ 1.2
RBM39-216ENST00000444878 PEG3Q9GZU2 1588 aa22.52■■□□□ 1.2
RBM39-216ENST00000444878 SMARCA2P51531 1590 aa22.51■■□□□ 1.19
RBM39-216ENST00000444878 CCDC88BA6NC98 1476 aa22.49■■□□□ 1.19
RBM39-216ENST00000444878 EIF4G1Q04637 1599 aaKnown RBP22.46■■□□□ 1.19
RBM39-216ENST00000444878 LOC105371045A0A1W2PR82 267 aa22.42■■□□□ 1.18
RBM39-216ENST00000444878 ATAD2BQ9ULI0 1458 aa22.38■■□□□ 1.17
RBM39-216ENST00000444878 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
RBM39-216ENST00000444878 FAM9AQ8IZU1 332 aaPredicted RBP22.24■■□□□ 1.15
RBM39-216ENST00000444878 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
RBM39-216ENST00000444878 HMGXB3Q12766 1538 aa22.08■■□□□ 1.13
RBM39-216ENST00000444878 NCAPD3P42695 1498 aa22.08■■□□□ 1.12
RBM39-216ENST00000444878 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
RBM39-216ENST00000444878 EHMT2Q96KQ7 1210 aa21.97■■□□□ 1.11
RBM39-216ENST00000444878 SLC24A1O60721 1099 aa21.92■■□□□ 1.1
RBM39-216ENST00000444878 SYNJ1O43426 1573 aa21.87■■□□□ 1.09
RBM39-216ENST00000444878 SOGA1O94964 1423 aa21.87■■□□□ 1.09
RBM39-216ENST00000444878 PCGF6Q9BYE7 350 aa21.87■■□□□ 1.09
RBM39-216ENST00000444878 EEA1Q15075 1411 aa21.84■■□□□ 1.09
RBM39-216ENST00000444878 CC2D2AQ9P2K1 1620 aa21.81■■□□□ 1.08
RBM39-216ENST00000444878 RUSC2Q8N2Y8 1516 aa21.77■■□□□ 1.08
RBM39-216ENST00000444878 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
RBM39-216ENST00000444878 CFTRP13569 1480 aa21.73■■□□□ 1.07
RBM39-216ENST00000444878 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
RBM39-216ENST00000444878 TRIM26Q12899 539 aaPredicted RBP21.7■■□□□ 1.06
RBM39-216ENST00000444878 BIVM-ERCC5R4GMW8 1640 aa21.69■■□□□ 1.06
RBM39-216ENST00000444878 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
RBM39-216ENST00000444878 TNIKQ9UKE5 1360 aa21.61■■□□□ 1.05
RBM39-216ENST00000444878 GOLGA3Q08378 1498 aa21.61■■□□□ 1.05
RBM39-216ENST00000444878 CADPSQ9ULU8 1353 aa21.58■■□□□ 1.05
RBM39-216ENST00000444878 UBTFP17480 764 aaKnown RBP21.58■■□□□ 1.04
RBM39-216ENST00000444878 CUX1P39880 1505 aa21.57■■□□□ 1.04
RBM39-216ENST00000444878 CEP162Q5TB80 1403 aa21.56■■□□□ 1.04
RBM39-216ENST00000444878 KIF21BO75037 1637 aa21.56■■□□□ 1.04
RBM39-216ENST00000444878 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
RBM39-216ENST00000444878 HRCP23327 699 aa21.53■■□□□ 1.04
RBM39-216ENST00000444878 RAPGEF2Q9Y4G8 1499 aa21.4■■□□□ 1.02
RBM39-216ENST00000444878 PPARGC1BQ86YN6 1023 aaKnown RBP21.38■■□□□ 1.01
RBM39-216ENST00000444878 KIF27Q86VH2 1401 aa21.38■■□□□ 1.01
RBM39-216ENST00000444878 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
RBM39-216ENST00000444878 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
RBM39-216ENST00000444878 PRXQ9BXM0 1461 aa21.32■■□□□ 1
RBM39-216ENST00000444878 NESP48681 1621 aa21.3■■□□□ 1
RBM39-216ENST00000444878 CLIP1P30622 1438 aa21.29■■□□□ 1
RBM39-216ENST00000444878 FGD5Q6ZNL6 1462 aa21.28■■□□□ 1
RBM39-216ENST00000444878 LAMC3Q9Y6N6 1575 aa21.28■■□□□ 1
RBM39-216ENST00000444878 CUX2O14529 1486 aa21.24■□□□□ 0.99
RBM39-216ENST00000444878 DNMBPQ6XZF7 1577 aa21.23■□□□□ 0.99
RBM39-216ENST00000444878 TOPBP1Q92547 1522 aa21.17■□□□□ 0.98
RBM39-216ENST00000444878 DNAJC5BQ9UF47 199 aa21.17■□□□□ 0.98
RBM39-216ENST00000444878 RANGAP1P46060 587 aaPredicted RBP21.17■□□□□ 0.98
RBM39-216ENST00000444878 VPS8Q8N3P4 1428 aa21.15■□□□□ 0.98
RBM39-216ENST00000444878 TTBK1Q5TCY1 1321 aaPredicted RBP21.14■□□□□ 0.98
RBM39-216ENST00000444878 IGF1RP08069 1367 aa21.14■□□□□ 0.97
RBM39-216ENST00000444878 PDS5BQ9NTI5 1447 aa21.11■□□□□ 0.97
RBM39-216ENST00000444878 POLA1P09884 1462 aaPredicted RBP21.11■□□□□ 0.97
RBM39-216ENST00000444878 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
RBM39-216ENST00000444878 ABCA10Q8WWZ4 1543 aa21.07■□□□□ 0.96
RBM39-216ENST00000444878 URB2Q14146 1524 aaKnown RBP21.06■□□□□ 0.96
RBM39-216ENST00000444878 CARMIL1Q5VZK9 1371 aa21.06■□□□□ 0.96
RBM39-216ENST00000444878 KIF21AQ7Z4S6 1674 aa21.05■□□□□ 0.96
RBM39-216ENST00000444878 APLP2Q06481 763 aa21.04■□□□□ 0.96
RBM39-216ENST00000444878 ZEB1P37275 1124 aaPredicted RBP21.03■□□□□ 0.96
RBM39-216ENST00000444878 ARAP1Q96P48 1450 aa21.01■□□□□ 0.95
RBM39-216ENST00000444878 WDR97A6NE52 1622 aa20.97■□□□□ 0.95
RBM39-216ENST00000444878 ARHGAP35Q9NRY4 1499 aa20.93■□□□□ 0.94
RBM39-216ENST00000444878 CUL7Q14999 1698 aa20.93■□□□□ 0.94
RBM39-216ENST00000444878 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
RBM39-216ENST00000444878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.84■□□□□ 0.93
RBM39-216ENST00000444878 TDRD9Q8NDG6 1382 aaKnown RBP20.84■□□□□ 0.93
RBM39-216ENST00000444878 GAPVD1Q14C86 1478 aa20.83■□□□□ 0.93
RBM39-216ENST00000444878 CCER1Q8TC90 406 aaPredicted RBP20.81■□□□□ 0.92
RBM39-216ENST00000444878 TARBP1Q13395 1621 aaKnown RBP20.81■□□□□ 0.92
RBM39-216ENST00000444878 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
RBM39-216ENST00000444878 CTTNBP2Q8WZ74 1663 aa20.8■□□□□ 0.92
RBM39-216ENST00000444878 KANK4Q5T7N3 995 aaPredicted RBP20.74■□□□□ 0.91
RBM39-216ENST00000444878 HNRNPUL2Q1KMD3 747 aaKnown RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms