RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-223ENST00000463004 NISCHQ9Y2I1 1504 aa22.84■■□□□ 1.25
RBM39-223ENST00000463004 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
RBM39-223ENST00000463004 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
RBM39-223ENST00000463004 SUPT5HO00267 1087 aaKnown RBP19.83■□□□□ 0.76
RBM39-223ENST00000463004 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
RBM39-223ENST00000463004 ABCC9O60706 1549 aa19.09■□□□□ 0.65
RBM39-223ENST00000463004 ZCCHC6Q5VYS8 1495 aaKnown RBP19.04■□□□□ 0.64
RBM39-223ENST00000463004 TRIM41Q8WV44 630 aa18.72■□□□□ 0.59
RBM39-223ENST00000463004 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
RBM39-223ENST00000463004 NACADO15069 1562 aa18.6■□□□□ 0.57
RBM39-223ENST00000463004 RB1CC1Q8TDY2 1594 aa18.56■□□□□ 0.56
RBM39-223ENST00000463004 FAM9AQ8IZU1 332 aaPredicted RBP18.56■□□□□ 0.56
RBM39-223ENST00000463004 APLP2Q06481 763 aa18.55■□□□□ 0.56
RBM39-223ENST00000463004 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.541e-8■□□□□ 11.3
RBM39-223ENST00000463004 SCRIBQ14160 1630 aa18.41■□□□□ 0.54
RBM39-223ENST00000463004 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
RBM39-223ENST00000463004 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
RBM39-223ENST00000463004 EHMT2Q96KQ7 1210 aa18.31■□□□□ 0.52
RBM39-223ENST00000463004 UBTFP17480 764 aaKnown RBP18.22■□□□□ 0.51
RBM39-223ENST00000463004 ZEB1P37275 1124 aaPredicted RBP17.98■□□□□ 0.47
RBM39-223ENST00000463004 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
RBM39-223ENST00000463004 BAZ1AQ9NRL2 1556 aaPredicted RBP17.93■□□□□ 0.46
RBM39-223ENST00000463004 PCGF6Q9BYE7 350 aa17.9■□□□□ 0.46
RBM39-223ENST00000463004 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
RBM39-223ENST00000463004 TRIM26Q12899 539 aaPredicted RBP17.8■□□□□ 0.44
RBM39-223ENST00000463004 ATP1B4Q9UN42 357 aaPredicted RBP17.79■□□□□ 0.44
RBM39-223ENST00000463004 LOC105371045A0A1W2PR82 267 aa17.73■□□□□ 0.43
RBM39-223ENST00000463004 BAZ1BQ9UIG0 1483 aaKnown RBP17.71■□□□□ 0.43
RBM39-223ENST00000463004 CSRNP3Q8WYN3 585 aa17.68■□□□□ 0.42
RBM39-223ENST00000463004 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
RBM39-223ENST00000463004 CCER1Q8TC90 406 aaPredicted RBP17.64■□□□□ 0.41
RBM39-223ENST00000463004 EEA1Q15075 1411 aa17.61■□□□□ 0.41
RBM39-223ENST00000463004 CECR2Q9BXF3 1484 aa17.6■□□□□ 0.41
RBM39-223ENST00000463004 SMARCA2P51531 1590 aa17.6■□□□□ 0.41
RBM39-223ENST00000463004 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
RBM39-223ENST00000463004 WRNQ14191 1432 aaPredicted RBP eCLIP17.43■□□□□ 0.38
RBM39-223ENST00000463004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.42■□□□□ 0.38
RBM39-223ENST00000463004 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
RBM39-223ENST00000463004 TOP2AP11388 1531 aaKnown RBP17.42■□□□□ 0.38
RBM39-223ENST00000463004 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
RBM39-223ENST00000463004 PPARGC1BQ86YN6 1023 aaKnown RBP17.33■□□□□ 0.37
RBM39-223ENST00000463004 CCDC88BA6NC98 1476 aa17.3■□□□□ 0.36
RBM39-223ENST00000463004 ATAD2BQ9ULI0 1458 aa17.28■□□□□ 0.36
RBM39-223ENST00000463004 KIF27Q86VH2 1401 aa17.28■□□□□ 0.36
RBM39-223ENST00000463004 HRCP23327 699 aa17.27■□□□□ 0.36
RBM39-223ENST00000463004 GOLGA3Q08378 1498 aa17.26■□□□□ 0.35
RBM39-223ENST00000463004 PELP1Q8IZL8 1130 aaKnown RBP17.24■□□□□ 0.35
RBM39-223ENST00000463004 WIZO95785 1651 aa17.22■□□□□ 0.35
RBM39-223ENST00000463004 CDK11AQ9UQ88 783 aaPredicted RBP17.22■□□□□ 0.35
RBM39-223ENST00000463004 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.34
RBM39-223ENST00000463004 FBLN2P98095 1184 aa17.2■□□□□ 0.34
RBM39-223ENST00000463004 PDS5BQ9NTI5 1447 aa17.17■□□□□ 0.34
RBM39-223ENST00000463004 ITGAEP38570 1179 aa17.17■□□□□ 0.34
RBM39-223ENST00000463004 TNIKQ9UKE5 1360 aa17.15■□□□□ 0.34
RBM39-223ENST00000463004 CENPBP07199 599 aaPredicted RBP17.12■□□□□ 0.33
RBM39-223ENST00000463004 CLIP1P30622 1438 aa17.12■□□□□ 0.33
RBM39-223ENST00000463004 FAM50AQ14320 339 aaKnown RBP17.11■□□□□ 0.33
RBM39-223ENST00000463004 CADPSQ9ULU8 1353 aa17.11■□□□□ 0.33
RBM39-223ENST00000463004 NCAPD3P42695 1498 aa17.11■□□□□ 0.33
RBM39-223ENST00000463004 MYT1LQ9UL68 1186 aa17.07■□□□□ 0.32
RBM39-223ENST00000463004 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
RBM39-223ENST00000463004 CHMP7Q8WUX9 453 aaPredicted RBP17.02■□□□□ 0.32
RBM39-223ENST00000463004 CEP162Q5TB80 1403 aa17.02■□□□□ 0.31
RBM39-223ENST00000463004 ABCC8Q09428 1581 aa17.02■□□□□ 0.31
RBM39-223ENST00000463004 P3H3Q8IVL6 736 aa17■□□□□ 0.31
RBM39-223ENST00000463004 EIF4G1Q04637 1599 aaKnown RBP17■□□□□ 0.31
RBM39-223ENST00000463004 ACIN1Q9UKV3 1341 aaKnown RBP16.98■□□□□ 0.31
RBM39-223ENST00000463004 CUX2O14529 1486 aa16.96■□□□□ 0.31
RBM39-223ENST00000463004 HMGXB3Q12766 1538 aa16.93■□□□□ 0.3
RBM39-223ENST00000463004 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
RBM39-223ENST00000463004 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
RBM39-223ENST00000463004 FHAD1B1AJZ9 1412 aa16.88■□□□□ 0.29
RBM39-223ENST00000463004 SOGA1O94964 1423 aa16.87■□□□□ 0.29
RBM39-223ENST00000463004 MTUS2Q5JR59 1369 aa16.87■□□□□ 0.29
RBM39-223ENST00000463004 BICRAQ9NZM4 1560 aa16.86■□□□□ 0.29
RBM39-223ENST00000463004 NPM1P06748 294 aaKnown RBP eCLIP16.86■□□□□ 0.29
RBM39-223ENST00000463004 FANCD2Q9BXW9 1451 aa16.82■□□□□ 0.28
RBM39-223ENST00000463004 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
RBM39-223ENST00000463004 CFTRP13569 1480 aa16.75■□□□□ 0.27
RBM39-223ENST00000463004 RAPGEF2Q9Y4G8 1499 aa16.73■□□□□ 0.27
RBM39-223ENST00000463004 VPS8Q8N3P4 1428 aa16.72■□□□□ 0.27
RBM39-223ENST00000463004 PLEKHD1A6NEE1 506 aa16.71■□□□□ 0.27
RBM39-223ENST00000463004 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
RBM39-223ENST00000463004 ARID3CA6NKF2 412 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 NEFLP07196 543 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 FMN1Q68DA7 1419 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 CARMIL2Q6F5E8 1435 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 TSPY4P0CV99 314 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 TSPY10P0CW01 314 aa16.67■□□□□ 0.26
RBM39-223ENST00000463004 CC2D2AQ9P2K1 1620 aa16.66■□□□□ 0.26
RBM39-223ENST00000463004 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
RBM39-223ENST00000463004 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
RBM39-223ENST00000463004 DIEXFQ68CQ4 756 aaKnown RBP16.62■□□□□ 0.25
RBM39-223ENST00000463004 UNC13AQ9UPW8 1703 aa16.61■□□□□ 0.25
RBM39-223ENST00000463004 ZNF316A6NFI3 1004 aaPredicted RBP16.6■□□□□ 0.25
RBM39-223ENST00000463004 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
RBM39-223ENST00000463004 CLSPNQ9HAW4 1339 aa16.57■□□□□ 0.24
RBM39-223ENST00000463004 TONSLQ96HA7 1378 aa16.56■□□□□ 0.24
RBM39-223ENST00000463004 POLR3GLQ9BT43 218 aa16.53■□□□□ 0.24
RBM39-223ENST00000463004 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms