RNA–Protein interactions for RNA: ENST00000639702.1

RBM39-245, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 5,914 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-245ENST00000639702 DCAF8L2P0C7V8 631 aa21.13■□□□□ 0.97
RBM39-245ENST00000639702 NISCHQ9Y2I1 1504 aa20.16■□□□□ 0.82
RBM39-245ENST00000639702 SUPT5HO00267 1087 aaKnown RBP19.92■□□□□ 0.78
RBM39-245ENST00000639702 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
RBM39-245ENST00000639702 APLP2Q06481 763 aa19.31■□□□□ 0.68
RBM39-245ENST00000639702 PELP1Q8IZL8 1130 aaKnown RBP19.3■□□□□ 0.68
RBM39-245ENST00000639702 FAM9AQ8IZU1 332 aaPredicted RBP19.27■□□□□ 0.67
RBM39-245ENST00000639702 EHMT2Q96KQ7 1210 aa19.2■□□□□ 0.66
RBM39-245ENST00000639702 TRIM41Q8WV44 630 aa18.6■□□□□ 0.57
RBM39-245ENST00000639702 TTBK1Q5TCY1 1321 aaPredicted RBP18.58■□□□□ 0.57
RBM39-245ENST00000639702 ZEB1P37275 1124 aaPredicted RBP18.58■□□□□ 0.56
RBM39-245ENST00000639702 ATP1B4Q9UN42 357 aaPredicted RBP18.51■□□□□ 0.55
RBM39-245ENST00000639702 RANGAP1P46060 587 aaPredicted RBP18.5■□□□□ 0.55
RBM39-245ENST00000639702 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
RBM39-245ENST00000639702 CCER1Q8TC90 406 aaPredicted RBP18.45■□□□□ 0.54
RBM39-245ENST00000639702 CENPBP07199 599 aaPredicted RBP18.45■□□□□ 0.54
RBM39-245ENST00000639702 UBTFP17480 764 aaKnown RBP18.42■□□□□ 0.54
RBM39-245ENST00000639702 ERICH6Q7L0X2 663 aa18.37■□□□□ 0.53
RBM39-245ENST00000639702 NEFLP07196 543 aa18.16■□□□□ 0.5
RBM39-245ENST00000639702 MYT1LQ9UL68 1186 aa17.94■□□□□ 0.46
RBM39-245ENST00000639702 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.91■□□□□ 0.46
RBM39-245ENST00000639702 HNRNPUL2Q1KMD3 747 aaKnown RBP17.91■□□□□ 0.46
RBM39-245ENST00000639702 TRIM26Q12899 539 aaPredicted RBP17.9■□□□□ 0.46
RBM39-245ENST00000639702 YTHDC1Q96MU7 727 aaKnown RBP17.84■□□□□ 0.45
RBM39-245ENST00000639702 PPARGC1BQ86YN6 1023 aaKnown RBP17.77■□□□□ 0.44
RBM39-245ENST00000639702 ITGAEP38570 1179 aa17.74■□□□□ 0.43
RBM39-245ENST00000639702 MYT1Q01538 1121 aa17.71■□□□□ 0.43
RBM39-245ENST00000639702 DAXXQ9UER7 740 aaPredicted RBP17.69■□□□□ 0.42
RBM39-245ENST00000639702 POLR3GLQ9BT43 218 aa17.68■□□□□ 0.42
RBM39-245ENST00000639702 CHIC1Q5VXU3 224 aa17.55■□□□□ 0.4
RBM39-245ENST00000639702 HRCP23327 699 aa17.52■□□□□ 0.39
RBM39-245ENST00000639702 SLC4A1APQ9BWU0 796 aaKnown RBP17.48■□□□□ 0.39
RBM39-245ENST00000639702 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
RBM39-245ENST00000639702 ABCC9O60706 1549 aa17.44■□□□□ 0.38
RBM39-245ENST00000639702 FAM50AQ14320 339 aaKnown RBP17.4■□□□□ 0.38
RBM39-245ENST00000639702 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.371e-8■□□□□ 11.3
RBM39-245ENST00000639702 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
RBM39-245ENST00000639702 CNGB1Q14028 1251 aaPredicted RBP17.33■□□□□ 0.37
RBM39-245ENST00000639702 CLSPNQ9HAW4 1339 aa17.26■□□□□ 0.35
RBM39-245ENST00000639702 ZNF316A6NFI3 1004 aaPredicted RBP17.25■□□□□ 0.35
RBM39-245ENST00000639702 DIEXFQ68CQ4 756 aaKnown RBP17.2■□□□□ 0.34
RBM39-245ENST00000639702 NEUROD1Q13562 356 aa17.15■□□□□ 0.34
RBM39-245ENST00000639702 FBLN2P98095 1184 aa17.15■□□□□ 0.34
RBM39-245ENST00000639702 RTL5Q5HYW3 569 aaPredicted RBP17.15■□□□□ 0.34
RBM39-245ENST00000639702 ANP32CO43423 234 aa17.11■□□□□ 0.33
RBM39-245ENST00000639702 ZBTB47Q9UFB7 747 aaPredicted RBP17.11■□□□□ 0.33
RBM39-245ENST00000639702 ZNF326Q5BKZ1 582 aaKnown RBP17.06■□□□□ 0.32
RBM39-245ENST00000639702 NEFMP07197 916 aa17.03■□□□□ 0.32
RBM39-245ENST00000639702 CDK11AQ9UQ88 783 aaPredicted RBP17.01■□□□□ 0.31
RBM39-245ENST00000639702 BCANQ96GW7 911 aa16.97■□□□□ 0.31
RBM39-245ENST00000639702 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
RBM39-245ENST00000639702 CANXP27824 592 aaKnown RBP16.93■□□□□ 0.3
RBM39-245ENST00000639702 P3H3Q8IVL6 736 aa16.88■□□□□ 0.29
RBM39-245ENST00000639702 ESF1Q9H501 851 aaKnown RBP16.88■□□□□ 0.29
RBM39-245ENST00000639702 SLC24A1O60721 1099 aa16.87■□□□□ 0.29
RBM39-245ENST00000639702 ZNF777Q9ULD5 760 aaPredicted RBP16.85■□□□□ 0.29
RBM39-245ENST00000639702 SCRIBQ14160 1630 aa16.82■□□□□ 0.28
RBM39-245ENST00000639702 ARID3CA6NKF2 412 aa16.8■□□□□ 0.28
RBM39-245ENST00000639702 NPM1P06748 294 aaKnown RBP eCLIP16.79■□□□□ 0.28
RBM39-245ENST00000639702 STAG3Q9UJ98 1225 aa16.74■□□□□ 0.27
RBM39-245ENST00000639702 TONSLQ96HA7 1378 aa16.7■□□□□ 0.26
RBM39-245ENST00000639702 GTF3C3Q9Y5Q9 886 aa16.69■□□□□ 0.26
RBM39-245ENST00000639702 ZCCHC6Q5VYS8 1495 aaKnown RBP16.66■□□□□ 0.26
RBM39-245ENST00000639702 CHGAP10645 457 aaKnown RBP16.65■□□□□ 0.26
RBM39-245ENST00000639702 ANP32AP39687 249 aaKnown RBP16.64■□□□□ 0.26
RBM39-245ENST00000639702 CCDC180Q9P1Z9 1646 aa16.62■□□□□ 0.25
RBM39-245ENST00000639702 BCL11AQ9H165 835 aa16.61■□□□□ 0.25
RBM39-245ENST00000639702 TSPY4P0CV99 314 aa16.53■□□□□ 0.24
RBM39-245ENST00000639702 TSPY10P0CW01 314 aa16.53■□□□□ 0.24
RBM39-245ENST00000639702 UPF2Q9HAU5 1272 aaKnown RBP16.52■□□□□ 0.23
RBM39-245ENST00000639702 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
RBM39-245ENST00000639702 ACIN1Q9UKV3 1341 aaKnown RBP16.5■□□□□ 0.23
RBM39-245ENST00000639702 RB1CC1Q8TDY2 1594 aa16.5■□□□□ 0.23
RBM39-245ENST00000639702 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.49■□□□□ 0.23
RBM39-245ENST00000639702 CHMP7Q8WUX9 453 aaPredicted RBP16.49■□□□□ 0.23
RBM39-245ENST00000639702 ANP32BQ92688 251 aaKnown RBP16.48■□□□□ 0.23
RBM39-245ENST00000639702 MTUS2Q5JR59 1369 aa16.48■□□□□ 0.23
RBM39-245ENST00000639702 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.234e-13■■□□□ 11.5
RBM39-245ENST00000639702 HSP90AA1P07900 732 aaKnown RBP16.46■□□□□ 0.22
RBM39-245ENST00000639702 PLPPR3Q6T4P5 718 aa16.44■□□□□ 0.22
RBM39-245ENST00000639702 WDR43Q15061 677 aaKnown RBP eCLIP16.44■□□□□ 0.223e-7■■□□□ 11.8
RBM39-245ENST00000639702 CHIC2Q9UKJ5 165 aa16.43■□□□□ 0.22
RBM39-245ENST00000639702 NPM2Q86SE8 214 aaKnown RBP16.43■□□□□ 0.22
RBM39-245ENST00000639702 HNRNPUQ00839 825 aaKnown RBP eCLIP16.42■□□□□ 0.22
RBM39-245ENST00000639702 TMC1Q8TDI8 760 aa16.42■□□□□ 0.22
RBM39-245ENST00000639702 RSF1Q96T23 1441 aaPredicted RBP16.41■□□□□ 0.22
RBM39-245ENST00000639702 FAM9BQ8IZU0 186 aa16.4■□□□□ 0.22
RBM39-245ENST00000639702 EEA1Q15075 1411 aa16.38■□□□□ 0.21
RBM39-245ENST00000639702 DDX10Q13206 875 aaKnown RBP16.37■□□□□ 0.21
RBM39-245ENST00000639702 FKBP8Q14318 412 aa16.37■□□□□ 0.21
RBM39-245ENST00000639702 CLIP1P30622 1438 aa16.36■□□□□ 0.21
RBM39-245ENST00000639702 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
RBM39-245ENST00000639702 PLEKHD1A6NEE1 506 aa16.31■□□□□ 0.2
RBM39-245ENST00000639702 MYH16Q9H6N6 1097 aa16.31■□□□□ 0.2
RBM39-245ENST00000639702 GOLGA3Q08378 1498 aa16.3■□□□□ 0.2
RBM39-245ENST00000639702 PPP1R15AO75807 674 aaPredicted RBP16.29■□□□□ 0.2
RBM39-245ENST00000639702 CCDC136Q96JN2 1154 aa16.28■□□□□ 0.2
RBM39-245ENST00000639702 MRS2Q9HD23 443 aa16.28■□□□□ 0.2
RBM39-245ENST00000639702 NACADO15069 1562 aa16.28■□□□□ 0.2
RBM39-245ENST00000639702 EIF4G2P78344 907 aaKnown RBP eCLIP16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms