RNA–Protein interactions for RNA: ENST00000338163.10

RBM39-202, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-202ENST00000338163 NISCHQ9Y2I1 1504 aa24.34■■□□□ 1.49
RBM39-202ENST00000338163 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
RBM39-202ENST00000338163 ABCC9O60706 1549 aa20.62■□□□□ 0.89
RBM39-202ENST00000338163 DCAF8L2P0C7V8 631 aa20.5■□□□□ 0.87
RBM39-202ENST00000338163 ZCCHC6Q5VYS8 1495 aaKnown RBP20.35■□□□□ 0.85
RBM39-202ENST00000338163 SHROOM4Q9ULL8 1493 aa20.16■□□□□ 0.82
RBM39-202ENST00000338163 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
RBM39-202ENST00000338163 SUPT5HO00267 1087 aaKnown RBP20.03■□□□□ 0.8
RBM39-202ENST00000338163 NACADO15069 1562 aa19.94■□□□□ 0.78
RBM39-202ENST00000338163 MYO15BQ96JP2 1530 aa19.91■□□□□ 0.78
RBM39-202ENST00000338163 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
RBM39-202ENST00000338163 HRCP23327 699 aa19.82■□□□□ 0.76
RBM39-202ENST00000338163 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
RBM39-202ENST00000338163 PCGF6Q9BYE7 350 aa19.65■□□□□ 0.74
RBM39-202ENST00000338163 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
RBM39-202ENST00000338163 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
RBM39-202ENST00000338163 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.711e-8■□□□□ 11.3
RBM39-202ENST00000338163 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
RBM39-202ENST00000338163 BICRAQ9NZM4 1560 aa19.27■□□□□ 0.68
RBM39-202ENST00000338163 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
RBM39-202ENST00000338163 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
RBM39-202ENST00000338163 TRIM26Q12899 539 aaPredicted RBP18.93■□□□□ 0.62
RBM39-202ENST00000338163 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.6
RBM39-202ENST00000338163 BAZ1AQ9NRL2 1556 aaPredicted RBP18.81■□□□□ 0.6
RBM39-202ENST00000338163 RSF1Q96T23 1441 aaPredicted RBP18.81■□□□□ 0.6
RBM39-202ENST00000338163 PELP1Q8IZL8 1130 aaKnown RBP18.8■□□□□ 0.6
RBM39-202ENST00000338163 SMARCA4P51532 1647 aa18.75■□□□□ 0.59
RBM39-202ENST00000338163 EIF4G1Q04637 1599 aaKnown RBP18.75■□□□□ 0.59
RBM39-202ENST00000338163 ZEB1P37275 1124 aaPredicted RBP18.69■□□□□ 0.58
RBM39-202ENST00000338163 SCAF1Q9H7N4 1312 aaKnown RBP18.68■□□□□ 0.58
RBM39-202ENST00000338163 WIZO95785 1651 aa18.63■□□□□ 0.57
RBM39-202ENST00000338163 EHMT2Q96KQ7 1210 aa18.59■□□□□ 0.57
RBM39-202ENST00000338163 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.56
RBM39-202ENST00000338163 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
RBM39-202ENST00000338163 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
RBM39-202ENST00000338163 DNAJC5BQ9UF47 199 aa18.54■□□□□ 0.56
RBM39-202ENST00000338163 SMARCA2P51531 1590 aa18.52■□□□□ 0.56
RBM39-202ENST00000338163 PEG3Q9GZU2 1588 aa18.48■□□□□ 0.55
RBM39-202ENST00000338163 TRIM41Q8WV44 630 aa18.48■□□□□ 0.55
RBM39-202ENST00000338163 BAZ1BQ9UIG0 1483 aaKnown RBP18.48■□□□□ 0.55
RBM39-202ENST00000338163 NCAPD3P42695 1498 aa18.45■□□□□ 0.54
RBM39-202ENST00000338163 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
RBM39-202ENST00000338163 HMGXB3Q12766 1538 aa18.35■□□□□ 0.53
RBM39-202ENST00000338163 CCDC88BA6NC98 1476 aa18.27■□□□□ 0.52
RBM39-202ENST00000338163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.52
RBM39-202ENST00000338163 ACIN1Q9UKV3 1341 aaKnown RBP18.26■□□□□ 0.51
RBM39-202ENST00000338163 NEUROD1Q13562 356 aa18.26■□□□□ 0.51
RBM39-202ENST00000338163 CCER1Q8TC90 406 aaPredicted RBP18.24■□□□□ 0.51
RBM39-202ENST00000338163 GTF3C3Q9Y5Q9 886 aa18.19■□□□□ 0.5
RBM39-202ENST00000338163 CENPBP07199 599 aaPredicted RBP18.12■□□□□ 0.49
RBM39-202ENST00000338163 DIEXFQ68CQ4 756 aaKnown RBP18.11■□□□□ 0.49
RBM39-202ENST00000338163 TTBK1Q5TCY1 1321 aaPredicted RBP18.11■□□□□ 0.49
RBM39-202ENST00000338163 CADPSQ9ULU8 1353 aa18.01■□□□□ 0.47
RBM39-202ENST00000338163 NESP48681 1621 aa17.99■□□□□ 0.47
RBM39-202ENST00000338163 MYT1Q01538 1121 aa17.97■□□□□ 0.47
RBM39-202ENST00000338163 CFTRP13569 1480 aa17.96■□□□□ 0.47
RBM39-202ENST00000338163 YTHDC1Q96MU7 727 aaKnown RBP17.95■□□□□ 0.46
RBM39-202ENST00000338163 LAMC3Q9Y6N6 1575 aa17.84■□□□□ 0.45
RBM39-202ENST00000338163 FANCD2Q9BXW9 1451 aa17.8■□□□□ 0.44
RBM39-202ENST00000338163 ABCC8Q09428 1581 aa17.8■□□□□ 0.44
RBM39-202ENST00000338163 PDS5BQ9NTI5 1447 aa17.8■□□□□ 0.44
RBM39-202ENST00000338163 ZNF316A6NFI3 1004 aaPredicted RBP17.75■□□□□ 0.43
RBM39-202ENST00000338163 WRNQ14191 1432 aaPredicted RBP eCLIP17.73■□□□□ 0.43
RBM39-202ENST00000338163 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
RBM39-202ENST00000338163 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
RBM39-202ENST00000338163 PRDM2Q13029 1718 aa17.68■□□□□ 0.42
RBM39-202ENST00000338163 MIER1Q8N108 512 aa17.66■□□□□ 0.42
RBM39-202ENST00000338163 KIF21AQ7Z4S6 1674 aa17.65■□□□□ 0.42
RBM39-202ENST00000338163 CEP162Q5TB80 1403 aa17.62■□□□□ 0.41
RBM39-202ENST00000338163 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
RBM39-202ENST00000338163 CUX1P39880 1505 aa17.61■□□□□ 0.41
RBM39-202ENST00000338163 UBTFP17480 764 aaKnown RBP17.6■□□□□ 0.41
RBM39-202ENST00000338163 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.41
RBM39-202ENST00000338163 URB2Q14146 1524 aaKnown RBP17.58■□□□□ 0.41
RBM39-202ENST00000338163 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
RBM39-202ENST00000338163 TOPBP1Q92547 1522 aa17.55■□□□□ 0.4
RBM39-202ENST00000338163 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
RBM39-202ENST00000338163 DNMBPQ6XZF7 1577 aa17.51■□□□□ 0.39
RBM39-202ENST00000338163 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
RBM39-202ENST00000338163 SOGA1O94964 1423 aa17.48■□□□□ 0.39
RBM39-202ENST00000338163 BIVM-ERCC5R4GMW8 1640 aa17.47■□□□□ 0.39
RBM39-202ENST00000338163 POLA1P09884 1462 aaPredicted RBP17.46■□□□□ 0.38
RBM39-202ENST00000338163 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
RBM39-202ENST00000338163 TNIKQ9UKE5 1360 aa17.44■□□□□ 0.38
RBM39-202ENST00000338163 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
RBM39-202ENST00000338163 WDR62O43379 1518 aa17.43■□□□□ 0.38
RBM39-202ENST00000338163 CSRNP3Q8WYN3 585 aa17.43■□□□□ 0.38
RBM39-202ENST00000338163 RUSC2Q8N2Y8 1516 aa17.38■□□□□ 0.37
RBM39-202ENST00000338163 CUX2O14529 1486 aa17.36■□□□□ 0.37
RBM39-202ENST00000338163 RANGAP1P46060 587 aaPredicted RBP17.36■□□□□ 0.37
RBM39-202ENST00000338163 TDRD9Q8NDG6 1382 aaKnown RBP17.35■□□□□ 0.37
RBM39-202ENST00000338163 APLP2Q06481 763 aa17.31■□□□□ 0.36
RBM39-202ENST00000338163 KIF27Q86VH2 1401 aa17.3■□□□□ 0.36
RBM39-202ENST00000338163 SUPT16HQ9Y5B9 1047 aaKnown RBP17.3■□□□□ 0.36
RBM39-202ENST00000338163 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
RBM39-202ENST00000338163 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
RBM39-202ENST00000338163 AQRO60306 1485 aaKnown RBP eCLIP17.27■□□□□ 0.352e-10■■■■□ 23
RBM39-202ENST00000338163 GOLGA3Q08378 1498 aa17.27■□□□□ 0.35
RBM39-202ENST00000338163 ZNF608Q9ULD9 1512 aaPredicted RBP17.27■□□□□ 0.35
RBM39-202ENST00000338163 TARBP1Q13395 1621 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms