RNA–Protein interactions for RNA: ENST00000461849.1

RBM39-222, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 861 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-222ENST00000461849 NISCHQ9Y2I1 1504 aa33.87■■■■□ 3.01
RBM39-222ENST00000461849 CCDC180Q9P1Z9 1646 aa30.27■■■□□ 2.44
RBM39-222ENST00000461849 ABCC9O60706 1549 aa30.03■■■□□ 2.4
RBM39-222ENST00000461849 RB1CC1Q8TDY2 1594 aa28.71■■■□□ 2.19
RBM39-222ENST00000461849 DCAF8L2P0C7V8 631 aa28.61■■■□□ 2.17
RBM39-222ENST00000461849 NACADO15069 1562 aa28.58■■■□□ 2.17
RBM39-222ENST00000461849 MYO15BQ96JP2 1530 aa28.24■■■□□ 2.11
RBM39-222ENST00000461849 ZCCHC6Q5VYS8 1495 aaKnown RBP28.12■■■□□ 2.09
RBM39-222ENST00000461849 PABPN1Q86U42 306 aaKnown RBP eCLIP28.02■■■□□ 2.08
RBM39-222ENST00000461849 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
RBM39-222ENST00000461849 DCAF1Q9Y4B6 1507 aa27.98■■■□□ 2.07
RBM39-222ENST00000461849 DNAJC5BQ9UF47 199 aa27.85■■■□□ 2.05
RBM39-222ENST00000461849 BICRAQ9NZM4 1560 aa27.77■■■□□ 2.04
RBM39-222ENST00000461849 SCRIBQ14160 1630 aa27.63■■■□□ 2.01
RBM39-222ENST00000461849 SHROOM4Q9ULL8 1493 aa27.51■■□□□ 1.99
RBM39-222ENST00000461849 EIF4G1Q04637 1599 aaKnown RBP27.14■■□□□ 1.93
RBM39-222ENST00000461849 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
RBM39-222ENST00000461849 CECR2Q9BXF3 1484 aa27.03■■□□□ 1.92
RBM39-222ENST00000461849 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
RBM39-222ENST00000461849 NCAPD3P42695 1498 aa26.36■■□□□ 1.81
RBM39-222ENST00000461849 ATAD2BQ9ULI0 1458 aa26.32■■□□□ 1.8
RBM39-222ENST00000461849 BAZ1AQ9NRL2 1556 aaPredicted RBP26.3■■□□□ 1.8
RBM39-222ENST00000461849 SMARCA2P51531 1590 aa26.29■■□□□ 1.8
RBM39-222ENST00000461849 HMGXB3Q12766 1538 aa26.19■■□□□ 1.78
RBM39-222ENST00000461849 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
RBM39-222ENST00000461849 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.77
RBM39-222ENST00000461849 PEG3Q9GZU2 1588 aa26.08■■□□□ 1.77
RBM39-222ENST00000461849 ERCC6Q03468 1493 aa25.97■■□□□ 1.75
RBM39-222ENST00000461849 NESP48681 1621 aa25.84■■□□□ 1.73
RBM39-222ENST00000461849 WIZO95785 1651 aa25.8■■□□□ 1.72
RBM39-222ENST00000461849 CUX2O14529 1486 aa25.77■■□□□ 1.72
RBM39-222ENST00000461849 LAMC3Q9Y6N6 1575 aa25.74■■□□□ 1.71
RBM39-222ENST00000461849 RSF1Q96T23 1441 aaPredicted RBP25.65■■□□□ 1.7
RBM39-222ENST00000461849 PDS5BQ9NTI5 1447 aa25.63■■□□□ 1.69
RBM39-222ENST00000461849 CADPSQ9ULU8 1353 aa25.6■■□□□ 1.69
RBM39-222ENST00000461849 KIF21AQ7Z4S6 1674 aa25.53■■□□□ 1.68
RBM39-222ENST00000461849 THOC2Q8NI27 1593 aaKnown RBP25.51■■□□□ 1.67
RBM39-222ENST00000461849 TOP2AP11388 1531 aaKnown RBP25.5■■□□□ 1.67
RBM39-222ENST00000461849 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
RBM39-222ENST00000461849 MRC2Q9UBG0 1479 aa25.34■■□□□ 1.65
RBM39-222ENST00000461849 CFTRP13569 1480 aa25.34■■□□□ 1.65
RBM39-222ENST00000461849 CEP164Q9UPV0 1460 aa25.32■■□□□ 1.64
RBM39-222ENST00000461849 FANCD2Q9BXW9 1451 aa25.3■■□□□ 1.64
RBM39-222ENST00000461849 WDR62O43379 1518 aa25.25■■□□□ 1.63
RBM39-222ENST00000461849 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
RBM39-222ENST00000461849 PRDM2Q13029 1718 aa25.11■■□□□ 1.61
RBM39-222ENST00000461849 URB2Q14146 1524 aaKnown RBP25.03■■□□□ 1.6
RBM39-222ENST00000461849 ABCC8Q09428 1581 aa24.86■■□□□ 1.57
RBM39-222ENST00000461849 TOPBP1Q92547 1522 aa24.84■■□□□ 1.57
RBM39-222ENST00000461849 SUPT5HO00267 1087 aaKnown RBP24.83■■□□□ 1.57
RBM39-222ENST00000461849 IFT140Q96RY7 1462 aa24.8■■□□□ 1.56
RBM39-222ENST00000461849 DNMBPQ6XZF7 1577 aa24.78■■□□□ 1.56
RBM39-222ENST00000461849 OSCARQ8IYS5 282 aa24.69■■□□□ 1.54
RBM39-222ENST00000461849 ZNF608Q9ULD9 1512 aaPredicted RBP24.69■■□□□ 1.54
RBM39-222ENST00000461849 POLA1P09884 1462 aaPredicted RBP24.6■■□□□ 1.53
RBM39-222ENST00000461849 EIF4G3O43432 1585 aaKnown RBP24.59■■□□□ 1.53
RBM39-222ENST00000461849 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
RBM39-222ENST00000461849 SOGA1O94964 1423 aa24.53■■□□□ 1.52
RBM39-222ENST00000461849 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.523e-11■■■■■ 27.2
RBM39-222ENST00000461849 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
RBM39-222ENST00000461849 TRIM41Q8WV44 630 aa24.51■■□□□ 1.51
RBM39-222ENST00000461849 FGD5Q6ZNL6 1462 aa24.5■■□□□ 1.51
RBM39-222ENST00000461849 CUX1P39880 1505 aa24.49■■□□□ 1.51
RBM39-222ENST00000461849 TDRD9Q8NDG6 1382 aaKnown RBP24.43■■□□□ 1.5
RBM39-222ENST00000461849 FBLN2P98095 1184 aa24.41■■□□□ 1.5
RBM39-222ENST00000461849 WDR97A6NE52 1622 aa24.39■■□□□ 1.49
RBM39-222ENST00000461849 CHD1O14646 1710 aa24.34■■□□□ 1.49
RBM39-222ENST00000461849 SNAPC4Q5SXM2 1469 aa24.3■■□□□ 1.48
RBM39-222ENST00000461849 GRIN2BQ13224 1484 aa24.28■■□□□ 1.48
RBM39-222ENST00000461849 RIMBP3CA6NJZ7 1639 aa24.27■■□□□ 1.48
RBM39-222ENST00000461849 RIMBP3BA6NNM3 1639 aa24.27■■□□□ 1.48
RBM39-222ENST00000461849 RIMBP3Q9UFD9 1639 aa24.27■■□□□ 1.48
RBM39-222ENST00000461849 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
RBM39-222ENST00000461849 MAGI1Q96QZ7 1491 aaPredicted RBP24.25■■□□□ 1.47
RBM39-222ENST00000461849 WRNQ14191 1432 aaPredicted RBP eCLIP24.24■■□□□ 1.47
RBM39-222ENST00000461849 GAPVD1Q14C86 1478 aa24.24■■□□□ 1.47
RBM39-222ENST00000461849 ARHGEF11O15085 1522 aa24.23■■□□□ 1.47
RBM39-222ENST00000461849 ABCA10Q8WWZ4 1543 aa24.23■■□□□ 1.47
RBM39-222ENST00000461849 TOP2BQ02880 1626 aa24.2■■□□□ 1.46
RBM39-222ENST00000461849 PBRM1Q86U86 1689 aa24.18■■□□□ 1.46
RBM39-222ENST00000461849 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
RBM39-222ENST00000461849 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
RBM39-222ENST00000461849 SYNJ1O43426 1573 aa24.16■■□□□ 1.46
RBM39-222ENST00000461849 ABCA5Q8WWZ7 1642 aa24.14■■□□□ 1.46
RBM39-222ENST00000461849 CYB5RLQ6IPT4 315 aa24.1■■□□□ 1.45
RBM39-222ENST00000461849 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
RBM39-222ENST00000461849 ARAP1Q96P48 1450 aa23.99■■□□□ 1.43
RBM39-222ENST00000461849 ADAMTS12P58397 1594 aa23.96■■□□□ 1.43
RBM39-222ENST00000461849 GRIN2AQ12879 1464 aa23.95■■□□□ 1.42
RBM39-222ENST00000461849 ERICH3Q5RHP9 1530 aa23.94■■□□□ 1.42
RBM39-222ENST00000461849 FHAD1B1AJZ9 1412 aa23.93■■□□□ 1.42
RBM39-222ENST00000461849 NUP160Q12769 1436 aa23.84■■□□□ 1.41
RBM39-222ENST00000461849 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
RBM39-222ENST00000461849 KIF27Q86VH2 1401 aa23.79■■□□□ 1.4
RBM39-222ENST00000461849 TRHP20396 242 aaPredicted RBP23.79■■□□□ 1.4
RBM39-222ENST00000461849 IGF1RP08069 1367 aa23.69■■□□□ 1.38
RBM39-222ENST00000461849 ERCC6L2Q5T890 1561 aa23.69■■□□□ 1.38
RBM39-222ENST00000461849 SHROOM2Q13796 1616 aa23.68■■□□□ 1.38
RBM39-222ENST00000461849 CUL7Q14999 1698 aa23.67■■□□□ 1.38
RBM39-222ENST00000461849 JPH4Q96JJ6 628 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms