RNA–Protein interactions for RNA: ENST00000579605.5

CDK5RAP3-213, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 560 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-213ENST00000579605 NISCHQ9Y2I1 1504 aa33.8■■■■□ 3
CDK5RAP3-213ENST00000579605 ABCC9O60706 1549 aa31.54■■■□□ 2.64
CDK5RAP3-213ENST00000579605 CCDC180Q9P1Z9 1646 aa30.48■■■□□ 2.47
CDK5RAP3-213ENST00000579605 DNAJC5BQ9UF47 199 aa30.35■■■□□ 2.45
CDK5RAP3-213ENST00000579605 RB1CC1Q8TDY2 1594 aa29.52■■■□□ 2.32
CDK5RAP3-213ENST00000579605 PABPN1Q86U42 306 aaKnown RBP eCLIP29.37■■■□□ 2.29
CDK5RAP3-213ENST00000579605 DCAF8L2P0C7V8 631 aa29.22■■■□□ 2.27
CDK5RAP3-213ENST00000579605 NACADO15069 1562 aa29.11■■■□□ 2.25
CDK5RAP3-213ENST00000579605 UNC13AQ9UPW8 1703 aa28.73■■■□□ 2.19
CDK5RAP3-213ENST00000579605 BICRAQ9NZM4 1560 aa28.68■■■□□ 2.18
CDK5RAP3-213ENST00000579605 CECR2Q9BXF3 1484 aa28.45■■■□□ 2.14
CDK5RAP3-213ENST00000579605 DNAJC5Q9H3Z4 198 aa28.37■■■□□ 2.13
CDK5RAP3-213ENST00000579605 MYO15BQ96JP2 1530 aa28.37■■■□□ 2.13
CDK5RAP3-213ENST00000579605 CC2D2AQ9P2K1 1620 aa28.32■■■□□ 2.12
CDK5RAP3-213ENST00000579605 SHROOM4Q9ULL8 1493 aa28.1■■■□□ 2.09
CDK5RAP3-213ENST00000579605 EIF4G1Q04637 1599 aaKnown RBP28.07■■■□□ 2.08
CDK5RAP3-213ENST00000579605 SCRIBQ14160 1630 aa27.93■■■□□ 2.06
CDK5RAP3-213ENST00000579605 ZCCHC6Q5VYS8 1495 aaKnown RBP27.8■■■□□ 2.04
CDK5RAP3-213ENST00000579605 DCAF1Q9Y4B6 1507 aa27.75■■■□□ 2.03
CDK5RAP3-213ENST00000579605 CUX2O14529 1486 aa27.36■■□□□ 1.97
CDK5RAP3-213ENST00000579605 ERCC6Q03468 1493 aa27.27■■□□□ 1.96
CDK5RAP3-213ENST00000579605 TRIM41Q8WV44 630 aa26.97■■□□□ 1.91
CDK5RAP3-213ENST00000579605 NCAPD3P42695 1498 aa26.94■■□□□ 1.9
CDK5RAP3-213ENST00000579605 NESP48681 1621 aa26.86■■□□□ 1.89
CDK5RAP3-213ENST00000579605 ATAD2BQ9ULI0 1458 aa26.78■■□□□ 1.88
CDK5RAP3-213ENST00000579605 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
CDK5RAP3-213ENST00000579605 HMGXB3Q12766 1538 aa26.59■■□□□ 1.85
CDK5RAP3-213ENST00000579605 THOC2Q8NI27 1593 aaKnown RBP26.57■■□□□ 1.84
CDK5RAP3-213ENST00000579605 BAZ1BQ9UIG0 1483 aaKnown RBP26.49■■□□□ 1.83
CDK5RAP3-213ENST00000579605 SMARCA4P51532 1647 aa26.48■■□□□ 1.83
CDK5RAP3-213ENST00000579605 LAMC3Q9Y6N6 1575 aa26.39■■□□□ 1.82
CDK5RAP3-213ENST00000579605 PDS5BQ9NTI5 1447 aa26.38■■□□□ 1.81
CDK5RAP3-213ENST00000579605 KIF21AQ7Z4S6 1674 aa26.33■■□□□ 1.81
CDK5RAP3-213ENST00000579605 BAZ1AQ9NRL2 1556 aaPredicted RBP26.25■■□□□ 1.79
CDK5RAP3-213ENST00000579605 MRC2Q9UBG0 1479 aa26.17■■□□□ 1.78
CDK5RAP3-213ENST00000579605 OSCARQ8IYS5 282 aa26.16■■□□□ 1.78
CDK5RAP3-213ENST00000579605 CADPSQ9ULU8 1353 aa26.16■■□□□ 1.78
CDK5RAP3-213ENST00000579605 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
CDK5RAP3-213ENST00000579605 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.77
CDK5RAP3-213ENST00000579605 WDR62O43379 1518 aa26.06■■□□□ 1.76
CDK5RAP3-213ENST00000579605 CEP164Q9UPV0 1460 aa25.91■■□□□ 1.74
CDK5RAP3-213ENST00000579605 FANCD2Q9BXW9 1451 aa25.85■■□□□ 1.73
CDK5RAP3-213ENST00000579605 RIMBP3CA6NJZ7 1639 aa25.75■■□□□ 1.71
CDK5RAP3-213ENST00000579605 RIMBP3BA6NNM3 1639 aa25.75■■□□□ 1.71
CDK5RAP3-213ENST00000579605 RIMBP3Q9UFD9 1639 aa25.75■■□□□ 1.71
CDK5RAP3-213ENST00000579605 WIZO95785 1651 aa25.7■■□□□ 1.7
CDK5RAP3-213ENST00000579605 TRHP20396 242 aaPredicted RBP25.68■■□□□ 1.7
CDK5RAP3-213ENST00000579605 CYB5RLQ6IPT4 315 aa25.68■■□□□ 1.7
CDK5RAP3-213ENST00000579605 URB2Q14146 1524 aaKnown RBP25.67■■□□□ 1.7
CDK5RAP3-213ENST00000579605 CFTRP13569 1480 aa25.63■■□□□ 1.69
CDK5RAP3-213ENST00000579605 ARHGEF11O15085 1522 aa25.62■■□□□ 1.69
CDK5RAP3-213ENST00000579605 ZNF608Q9ULD9 1512 aaPredicted RBP25.52■■□□□ 1.68
CDK5RAP3-213ENST00000579605 AEBP2Q6ZN18 517 aaPredicted RBP25.49■■□□□ 1.67
CDK5RAP3-213ENST00000579605 IFT140Q96RY7 1462 aa25.42■■□□□ 1.66
CDK5RAP3-213ENST00000579605 FBLN2P98095 1184 aa25.37■■□□□ 1.65
CDK5RAP3-213ENST00000579605 ARAP1Q96P48 1450 aa25.33■■□□□ 1.65
CDK5RAP3-213ENST00000579605 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
CDK5RAP3-213ENST00000579605 TOP2AP11388 1531 aaKnown RBP25.28■■□□□ 1.64
CDK5RAP3-213ENST00000579605 TOPBP1Q92547 1522 aa25.24■■□□□ 1.63
CDK5RAP3-213ENST00000579605 AQRO60306 1485 aaKnown RBP eCLIP25.24■■□□□ 1.632e-7■■■■□ 24.7
CDK5RAP3-213ENST00000579605 EIF4G3O43432 1585 aaKnown RBP25.22■■□□□ 1.63
CDK5RAP3-213ENST00000579605 CHD1O14646 1710 aa25.15■■□□□ 1.62
CDK5RAP3-213ENST00000579605 CCDC88BA6NC98 1476 aa25.1■■□□□ 1.61
CDK5RAP3-213ENST00000579605 ABCC8Q09428 1581 aa25.09■■□□□ 1.61
CDK5RAP3-213ENST00000579605 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
CDK5RAP3-213ENST00000579605 DNMBPQ6XZF7 1577 aa25.02■■□□□ 1.6
CDK5RAP3-213ENST00000579605 TDRD9Q8NDG6 1382 aaKnown RBP25■■□□□ 1.59
CDK5RAP3-213ENST00000579605 TARBP1Q13395 1621 aaKnown RBP25■■□□□ 1.59
CDK5RAP3-213ENST00000579605 CHMP7Q8WUX9 453 aaPredicted RBP24.98■■□□□ 1.59
CDK5RAP3-213ENST00000579605 RAD54L2Q9Y4B4 1467 aa24.95■■□□□ 1.58
CDK5RAP3-213ENST00000579605 POLA1P09884 1462 aaPredicted RBP24.94■■□□□ 1.58
CDK5RAP3-213ENST00000579605 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.58
CDK5RAP3-213ENST00000579605 SOGA1O94964 1423 aa24.89■■□□□ 1.58
CDK5RAP3-213ENST00000579605 CLASP1Q7Z460 1538 aa24.86■■□□□ 1.57
CDK5RAP3-213ENST00000579605 SYNJ1O43426 1573 aa24.8■■□□□ 1.56
CDK5RAP3-213ENST00000579605 GAPVD1Q14C86 1478 aa24.77■■□□□ 1.56
CDK5RAP3-213ENST00000579605 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
CDK5RAP3-213ENST00000579605 GRIN2BQ13224 1484 aa24.7■■□□□ 1.54
CDK5RAP3-213ENST00000579605 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.54
CDK5RAP3-213ENST00000579605 SYNJ2O15056 1496 aa24.69■■□□□ 1.54
CDK5RAP3-213ENST00000579605 WDR97A6NE52 1622 aa24.59■■□□□ 1.53
CDK5RAP3-213ENST00000579605 CUX1P39880 1505 aa24.53■■□□□ 1.52
CDK5RAP3-213ENST00000579605 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
CDK5RAP3-213ENST00000579605 ILDR1Q86SU0 546 aaPredicted RBP24.43■■□□□ 1.5
CDK5RAP3-213ENST00000579605 PBRM1Q86U86 1689 aa24.42■■□□□ 1.5
CDK5RAP3-213ENST00000579605 FAM69CQ0P6D2 419 aa24.36■■□□□ 1.49
CDK5RAP3-213ENST00000579605 GRIN2AQ12879 1464 aa24.36■■□□□ 1.49
CDK5RAP3-213ENST00000579605 CEP170Q5SW79 1584 aa24.36■■□□□ 1.49
CDK5RAP3-213ENST00000579605 KDM4FA0A1W2PPD8 638 aa24.33■■□□□ 1.49
CDK5RAP3-213ENST00000579605 ABCA10Q8WWZ4 1543 aa24.31■■□□□ 1.48
CDK5RAP3-213ENST00000579605 ABCA5Q8WWZ7 1642 aa24.28■■□□□ 1.48
CDK5RAP3-213ENST00000579605 NUP160Q12769 1436 aa24.28■■□□□ 1.48
CDK5RAP3-213ENST00000579605 KIF13AQ9H1H9 1805 aa24.28■■□□□ 1.48
CDK5RAP3-213ENST00000579605 NPM1P06748 294 aaKnown RBP eCLIP24.26■■□□□ 1.47
CDK5RAP3-213ENST00000579605 PRG4Q92954 1404 aaPredicted RBP24.22■■□□□ 1.47
CDK5RAP3-213ENST00000579605 JPH4Q96JJ6 628 aa24.2■■□□□ 1.46
CDK5RAP3-213ENST00000579605 SHROOM2Q13796 1616 aa24.18■■□□□ 1.46
CDK5RAP3-213ENST00000579605 ADAMTS12P58397 1594 aa24.18■■□□□ 1.46
CDK5RAP3-213ENST00000579605 ABCC10Q5T3U5 1492 aa24.18■■□□□ 1.46
CDK5RAP3-213ENST00000579605 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms