RNA–Protein interactions for RNA: ENST00000361162.10

RBM39-203, Transcript of RNA binding motif protein 39, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RBM39, Length 2,831 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-203ENST00000361162 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
RBM39-203ENST00000361162 CCDC180Q9P1Z9 1646 aa23.15■■□□□ 1.3
RBM39-203ENST00000361162 ZCCHC6Q5VYS8 1495 aaKnown RBP21.9■■□□□ 1.1
RBM39-203ENST00000361162 DCAF1Q9Y4B6 1507 aa21.88■■□□□ 1.09
RBM39-203ENST00000361162 MYO15BQ96JP2 1530 aa21.76■■□□□ 1.07
RBM39-203ENST00000361162 NACADO15069 1562 aa21.43■■□□□ 1.02
RBM39-203ENST00000361162 ABCC9O60706 1549 aa21.25■□□□□ 0.99
RBM39-203ENST00000361162 RB1CC1Q8TDY2 1594 aa21.2■□□□□ 0.98
RBM39-203ENST00000361162 UNC13AQ9UPW8 1703 aa20.75■□□□□ 0.91
RBM39-203ENST00000361162 SHROOM4Q9ULL8 1493 aa20.74■□□□□ 0.91
RBM39-203ENST00000361162 SCRIBQ14160 1630 aa20.69■□□□□ 0.9
RBM39-203ENST00000361162 HRCP23327 699 aa20.65■□□□□ 0.9
RBM39-203ENST00000361162 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.89
RBM39-203ENST00000361162 DCAF8L2P0C7V8 631 aa20.58■□□□□ 0.88
RBM39-203ENST00000361162 PPARGC1BQ86YN6 1023 aaKnown RBP20.48■□□□□ 0.87
RBM39-203ENST00000361162 BICRAQ9NZM4 1560 aa20.47■□□□□ 0.87
RBM39-203ENST00000361162 PCGF6Q9BYE7 350 aa20.42■□□□□ 0.86
RBM39-203ENST00000361162 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
RBM39-203ENST00000361162 PEG3Q9GZU2 1588 aa20.08■□□□□ 0.8
RBM39-203ENST00000361162 CHIC1Q5VXU3 224 aa20.08■□□□□ 0.8
RBM39-203ENST00000361162 SMARCA4P51532 1647 aa20.08■□□□□ 0.8
RBM39-203ENST00000361162 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
RBM39-203ENST00000361162 CECR2Q9BXF3 1484 aa19.91■□□□□ 0.78
RBM39-203ENST00000361162 MROH2BQ7Z745 1585 aa19.91■□□□□ 0.78
RBM39-203ENST00000361162 SMARCA2P51531 1590 aa19.84■□□□□ 0.77
RBM39-203ENST00000361162 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.77
RBM39-203ENST00000361162 LOC105371045A0A1W2PR82 267 aa19.8■□□□□ 0.76
RBM39-203ENST00000361162 TOP2AP11388 1531 aaKnown RBP19.78■□□□□ 0.76
RBM39-203ENST00000361162 HMGXB3Q12766 1538 aa19.77■□□□□ 0.76
RBM39-203ENST00000361162 WIZO95785 1651 aa19.75■□□□□ 0.75
RBM39-203ENST00000361162 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.751e-8■□□□□ 11.3
RBM39-203ENST00000361162 PELP1Q8IZL8 1130 aaKnown RBP19.71■□□□□ 0.75
RBM39-203ENST00000361162 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
RBM39-203ENST00000361162 NCAPD3P42695 1498 aa19.65■□□□□ 0.74
RBM39-203ENST00000361162 SCAF1Q9H7N4 1312 aaKnown RBP19.63■□□□□ 0.73
RBM39-203ENST00000361162 TRIM26Q12899 539 aaPredicted RBP19.56■□□□□ 0.72
RBM39-203ENST00000361162 CC2D2AQ9P2K1 1620 aa19.52■□□□□ 0.72
RBM39-203ENST00000361162 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
RBM39-203ENST00000361162 PRDM2Q13029 1718 aa19.38■□□□□ 0.69
RBM39-203ENST00000361162 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
RBM39-203ENST00000361162 ZEB1P37275 1124 aaPredicted RBP19.29■□□□□ 0.68
RBM39-203ENST00000361162 EHMT2Q96KQ7 1210 aa19.19■□□□□ 0.66
RBM39-203ENST00000361162 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
RBM39-203ENST00000361162 CFTRP13569 1480 aa19.12■□□□□ 0.65
RBM39-203ENST00000361162 FAM9AQ8IZU1 332 aaPredicted RBP19.1■□□□□ 0.65
RBM39-203ENST00000361162 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
RBM39-203ENST00000361162 ACIN1Q9UKV3 1341 aaKnown RBP19.07■□□□□ 0.64
RBM39-203ENST00000361162 GTF3C3Q9Y5Q9 886 aa19.02■□□□□ 0.64
RBM39-203ENST00000361162 BIVM-ERCC5R4GMW8 1640 aa18.96■□□□□ 0.63
RBM39-203ENST00000361162 CADPSQ9ULU8 1353 aa18.96■□□□□ 0.63
RBM39-203ENST00000361162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.93■□□□□ 0.62
RBM39-203ENST00000361162 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
RBM39-203ENST00000361162 TOP2BQ02880 1626 aa18.87■□□□□ 0.61
RBM39-203ENST00000361162 MYT1Q01538 1121 aa18.85■□□□□ 0.61
RBM39-203ENST00000361162 CCER1Q8TC90 406 aaPredicted RBP18.83■□□□□ 0.6
RBM39-203ENST00000361162 ABCC8Q09428 1581 aa18.81■□□□□ 0.6
RBM39-203ENST00000361162 DIEXFQ68CQ4 756 aaKnown RBP18.8■□□□□ 0.6
RBM39-203ENST00000361162 CENPBP07199 599 aaPredicted RBP18.78■□□□□ 0.6
RBM39-203ENST00000361162 WRNQ14191 1432 aaPredicted RBP eCLIP18.78■□□□□ 0.6
RBM39-203ENST00000361162 PDS5BQ9NTI5 1447 aa18.76■□□□□ 0.59
RBM39-203ENST00000361162 SYNJ1O43426 1573 aa18.75■□□□□ 0.59
RBM39-203ENST00000361162 DNMBPQ6XZF7 1577 aa18.75■□□□□ 0.59
RBM39-203ENST00000361162 FANCD2Q9BXW9 1451 aa18.74■□□□□ 0.59
RBM39-203ENST00000361162 EEA1Q15075 1411 aa18.7■□□□□ 0.58
RBM39-203ENST00000361162 CEP164Q9UPV0 1460 aa18.7■□□□□ 0.58
RBM39-203ENST00000361162 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
RBM39-203ENST00000361162 CUX1P39880 1505 aa18.69■□□□□ 0.58
RBM39-203ENST00000361162 YTHDC1Q96MU7 727 aaKnown RBP18.69■□□□□ 0.58
RBM39-203ENST00000361162 TTBK1Q5TCY1 1321 aaPredicted RBP18.68■□□□□ 0.58
RBM39-203ENST00000361162 WDR97A6NE52 1622 aa18.67■□□□□ 0.58
RBM39-203ENST00000361162 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.58
RBM39-203ENST00000361162 NESP48681 1621 aa18.62■□□□□ 0.57
RBM39-203ENST00000361162 WDR62O43379 1518 aa18.61■□□□□ 0.57
RBM39-203ENST00000361162 MRC2Q9UBG0 1479 aa18.58■□□□□ 0.56
RBM39-203ENST00000361162 TOPBP1Q92547 1522 aa18.58■□□□□ 0.56
RBM39-203ENST00000361162 THOC2Q8NI27 1593 aaKnown RBP18.57■□□□□ 0.56
RBM39-203ENST00000361162 URB2Q14146 1524 aaKnown RBP18.52■□□□□ 0.56
RBM39-203ENST00000361162 ABCA10Q8WWZ4 1543 aa18.48■□□□□ 0.55
RBM39-203ENST00000361162 KIF21BO75037 1637 aa18.48■□□□□ 0.55
RBM39-203ENST00000361162 FGD5Q6ZNL6 1462 aa18.46■□□□□ 0.55
RBM39-203ENST00000361162 TARBP1Q13395 1621 aaKnown RBP18.44■□□□□ 0.54
RBM39-203ENST00000361162 POLA1P09884 1462 aaPredicted RBP18.43■□□□□ 0.54
RBM39-203ENST00000361162 ABCA5Q8WWZ7 1642 aa18.42■□□□□ 0.54
RBM39-203ENST00000361162 ERICH3Q5RHP9 1530 aa18.4■□□□□ 0.54
RBM39-203ENST00000361162 CUL7Q14999 1698 aa18.38■□□□□ 0.53
RBM39-203ENST00000361162 ZNF316A6NFI3 1004 aaPredicted RBP18.38■□□□□ 0.53
RBM39-203ENST00000361162 MIER1Q8N108 512 aa18.38■□□□□ 0.53
RBM39-203ENST00000361162 KIF27Q86VH2 1401 aa18.36■□□□□ 0.53
RBM39-203ENST00000361162 IFT140Q96RY7 1462 aa18.36■□□□□ 0.53
RBM39-203ENST00000361162 ERCC6Q03468 1493 aa18.33■□□□□ 0.52
RBM39-203ENST00000361162 PBRM1Q86U86 1689 aa18.29■□□□□ 0.52
RBM39-203ENST00000361162 SOGA1O94964 1423 aa18.28■□□□□ 0.52
RBM39-203ENST00000361162 CUX2O14529 1486 aa18.28■□□□□ 0.52
RBM39-203ENST00000361162 PRXQ9BXM0 1461 aa18.28■□□□□ 0.52
RBM39-203ENST00000361162 GOLGA3Q08378 1498 aa18.24■□□□□ 0.51
RBM39-203ENST00000361162 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
RBM39-203ENST00000361162 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
RBM39-203ENST00000361162 RAD54L2Q9Y4B4 1467 aa18.16■□□□□ 0.5
RBM39-203ENST00000361162 ADAMTS12P58397 1594 aa18.15■□□□□ 0.5
RBM39-203ENST00000361162 CSRNP3Q8WYN3 585 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms