RNA–Protein interactions for RNA: ENST00000528062.7

RBM39-243, Transcript of RNA binding motif protein 39, humanhuman

TSL 1 (best) BASIC

Gene RBM39, Length 2,421 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-243ENST00000528062 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
RBM39-243ENST00000528062 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
RBM39-243ENST00000528062 ABCC9O60706 1549 aa24.93■■□□□ 1.58
RBM39-243ENST00000528062 ZCCHC6Q5VYS8 1495 aaKnown RBP24.61■■□□□ 1.53
RBM39-243ENST00000528062 DCAF1Q9Y4B6 1507 aa24.31■■□□□ 1.48
RBM39-243ENST00000528062 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
RBM39-243ENST00000528062 MYO15BQ96JP2 1530 aa24.23■■□□□ 1.47
RBM39-243ENST00000528062 NACADO15069 1562 aa24.23■■□□□ 1.47
RBM39-243ENST00000528062 RB1CC1Q8TDY2 1594 aa24.14■■□□□ 1.45
RBM39-243ENST00000528062 UNC13AQ9UPW8 1703 aa23.79■■□□□ 1.4
RBM39-243ENST00000528062 SCRIBQ14160 1630 aa23.74■■□□□ 1.39
RBM39-243ENST00000528062 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
RBM39-243ENST00000528062 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
RBM39-243ENST00000528062 PABPN1Q86U42 306 aaKnown RBP eCLIP23.35■■□□□ 1.331e-8■□□□□ 10.5
RBM39-243ENST00000528062 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
RBM39-243ENST00000528062 EIF4G1Q04637 1599 aaKnown RBP22.81■■□□□ 1.24
RBM39-243ENST00000528062 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
RBM39-243ENST00000528062 BAZ1AQ9NRL2 1556 aaPredicted RBP22.72■■□□□ 1.23
RBM39-243ENST00000528062 MROH2BQ7Z745 1585 aa22.71■■□□□ 1.23
RBM39-243ENST00000528062 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
RBM39-243ENST00000528062 RSF1Q96T23 1441 aaPredicted RBP22.58■■□□□ 1.2
RBM39-243ENST00000528062 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
RBM39-243ENST00000528062 WIZO95785 1651 aa22.52■■□□□ 1.2
RBM39-243ENST00000528062 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
RBM39-243ENST00000528062 ATAD2BQ9ULI0 1458 aa22.47■■□□□ 1.19
RBM39-243ENST00000528062 SMARCA2P51531 1590 aa22.42■■□□□ 1.18
RBM39-243ENST00000528062 NCAPD3P42695 1498 aa22.36■■□□□ 1.17
RBM39-243ENST00000528062 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
RBM39-243ENST00000528062 SUPT5HO00267 1087 aaKnown RBP22.28■■□□□ 1.16
RBM39-243ENST00000528062 BAZ1BQ9UIG0 1483 aaKnown RBP22.27■■□□□ 1.16
RBM39-243ENST00000528062 TOP2AP11388 1531 aaKnown RBP22.23■■□□□ 1.15
RBM39-243ENST00000528062 CCDC88BA6NC98 1476 aa21.97■■□□□ 1.11
RBM39-243ENST00000528062 NESP48681 1621 aa21.77■■□□□ 1.07
RBM39-243ENST00000528062 CHIC1Q5VXU3 224 aa21.76■■□□□ 1.07
RBM39-243ENST00000528062 CFTRP13569 1480 aa21.72■■□□□ 1.07
RBM39-243ENST00000528062 CADPSQ9ULU8 1353 aa21.71■■□□□ 1.07
RBM39-243ENST00000528062 LAMC3Q9Y6N6 1575 aa21.7■■□□□ 1.06
RBM39-243ENST00000528062 PRDM2Q13029 1718 aa21.67■■□□□ 1.06
RBM39-243ENST00000528062 KIF21AQ7Z4S6 1674 aa21.55■■□□□ 1.04
RBM39-243ENST00000528062 FANCD2Q9BXW9 1451 aa21.49■■□□□ 1.03
RBM39-243ENST00000528062 PDS5BQ9NTI5 1447 aa21.47■■□□□ 1.03
RBM39-243ENST00000528062 HRCP23327 699 aa21.42■■□□□ 1.02
RBM39-243ENST00000528062 CEP164Q9UPV0 1460 aa21.4■■□□□ 1.02
RBM39-243ENST00000528062 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
RBM39-243ENST00000528062 ABCC8Q09428 1581 aa21.37■■□□□ 1.01
RBM39-243ENST00000528062 THOC2Q8NI27 1593 aaKnown RBP21.35■■□□□ 1.01
RBM39-243ENST00000528062 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
RBM39-243ENST00000528062 MRC2Q9UBG0 1479 aa21.28■■□□□ 1
RBM39-243ENST00000528062 PCGF6Q9BYE7 350 aa21.28■■□□□ 1
RBM39-243ENST00000528062 CUX1P39880 1505 aa21.27■■□□□ 1
RBM39-243ENST00000528062 SYNJ1O43426 1573 aa21.26■□□□□ 0.99
RBM39-243ENST00000528062 WDR62O43379 1518 aa21.24■□□□□ 0.99
RBM39-243ENST00000528062 WRNQ14191 1432 aaPredicted RBP eCLIP21.23■□□□□ 0.99
RBM39-243ENST00000528062 DNMBPQ6XZF7 1577 aa21.23■□□□□ 0.99
RBM39-243ENST00000528062 TOPBP1Q92547 1522 aa21.22■□□□□ 0.99
RBM39-243ENST00000528062 BIVM-ERCC5R4GMW8 1640 aa21.2■□□□□ 0.98
RBM39-243ENST00000528062 TOP2BQ02880 1626 aa21.19■□□□□ 0.98
RBM39-243ENST00000528062 LOC105371045A0A1W2PR82 267 aa21.15■□□□□ 0.98
RBM39-243ENST00000528062 FGD5Q6ZNL6 1462 aa21.09■□□□□ 0.97
RBM39-243ENST00000528062 POLA1P09884 1462 aaPredicted RBP21.08■□□□□ 0.96
RBM39-243ENST00000528062 CUX2O14529 1486 aa21.06■□□□□ 0.96
RBM39-243ENST00000528062 TARBP1Q13395 1621 aaKnown RBP21.01■□□□□ 0.95
RBM39-243ENST00000528062 PPARGC1BQ86YN6 1023 aaKnown RBP21■□□□□ 0.95
RBM39-243ENST00000528062 RAD54L2Q9Y4B4 1467 aa21■□□□□ 0.95
RBM39-243ENST00000528062 WDR97A6NE52 1622 aa20.98■□□□□ 0.95
RBM39-243ENST00000528062 TRIM41Q8WV44 630 aa20.97■□□□□ 0.95
RBM39-243ENST00000528062 SOGA1O94964 1423 aa20.93■□□□□ 0.94
RBM39-243ENST00000528062 IFT140Q96RY7 1462 aa20.92■□□□□ 0.94
RBM39-243ENST00000528062 ABCA10Q8WWZ4 1543 aa20.89■□□□□ 0.94
RBM39-243ENST00000528062 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
RBM39-243ENST00000528062 ABCA5Q8WWZ7 1642 aa20.83■□□□□ 0.92
RBM39-243ENST00000528062 EIF4G3O43432 1585 aaKnown RBP20.82■□□□□ 0.92
RBM39-243ENST00000528062 RUSC2Q8N2Y8 1516 aa20.81■□□□□ 0.92
RBM39-243ENST00000528062 TDRD9Q8NDG6 1382 aaKnown RBP20.79■□□□□ 0.92
RBM39-243ENST00000528062 TRIM26Q12899 539 aaPredicted RBP20.78■□□□□ 0.92
RBM39-243ENST00000528062 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.922e-10■■■■□ 23
RBM39-243ENST00000528062 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
RBM39-243ENST00000528062 GAPVD1Q14C86 1478 aa20.72■□□□□ 0.91
RBM39-243ENST00000528062 KIF27Q86VH2 1401 aa20.71■□□□□ 0.91
RBM39-243ENST00000528062 ERICH3Q5RHP9 1530 aa20.64■□□□□ 0.89
RBM39-243ENST00000528062 GRIN2BQ13224 1484 aa20.64■□□□□ 0.89
RBM39-243ENST00000528062 IGF1RP08069 1367 aa20.62■□□□□ 0.89
RBM39-243ENST00000528062 SNAPC4Q5SXM2 1469 aa20.6■□□□□ 0.89
RBM39-243ENST00000528062 EEA1Q15075 1411 aa20.59■□□□□ 0.89
RBM39-243ENST00000528062 FAM9AQ8IZU1 332 aaPredicted RBP20.59■□□□□ 0.89
RBM39-243ENST00000528062 ADAMTS12P58397 1594 aa20.58■□□□□ 0.88
RBM39-243ENST00000528062 CUL7Q14999 1698 aa20.55■□□□□ 0.88
RBM39-243ENST00000528062 MAGI1Q96QZ7 1491 aaPredicted RBP20.54■□□□□ 0.88
RBM39-243ENST00000528062 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
RBM39-243ENST00000528062 PRXQ9BXM0 1461 aa20.51■□□□□ 0.87
RBM39-243ENST00000528062 CHD1O14646 1710 aa20.5■□□□□ 0.87
RBM39-243ENST00000528062 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
RBM39-243ENST00000528062 CARMIL1Q5VZK9 1371 aa20.47■□□□□ 0.87
RBM39-243ENST00000528062 SYNJ2O15056 1496 aa20.47■□□□□ 0.87
RBM39-243ENST00000528062 KIF21BO75037 1637 aa20.45■□□□□ 0.86
RBM39-243ENST00000528062 RAPGEF2Q9Y4G8 1499 aa20.43■□□□□ 0.86
RBM39-243ENST00000528062 GRIN2AQ12879 1464 aa20.42■□□□□ 0.86
RBM39-243ENST00000528062 EHMT2Q96KQ7 1210 aa20.41■□□□□ 0.86
RBM39-243ENST00000528062 ZEB1P37275 1124 aaPredicted RBP20.36■□□□□ 0.85
RBM39-243ENST00000528062 CEP170Q5SW79 1584 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms