Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.984e-6■□□□□ 10.5
U2AF1Q01081 PSPC1-204ENST00000492741 1709 ntTSL 229.37■■■□□ 2.293e-8■□□□□ 10.5
U2AF1Q01081 PSPC1-203ENST00000471658 1647 ntTSL 1 (best)25.65■■□□□ 1.73e-8■□□□□ 10.5
U2AF1Q01081 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.63e-8■□□□□ 10.5
U2AF1Q01081 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.453e-8■□□□□ 10.5
U2AF1Q01081 PSPC1-208ENST00000635562 422 ntTSL 33.42□□□□□ -1.863e-8■□□□□ 10.5
U2AF1Q01081 ACTR3-206ENST00000484165 676 ntTSL 25.78□□□□□ -1.481e-19■□□□□ 10.5
U2AF1Q01081 LARS-204ENST00000504323 608 ntTSL 311.98□□□□□ -0.497e-8■□□□□ 10.5
U2AF1Q01081 LARS-210ENST00000508667 707 ntTSL 310.76□□□□□ -0.697e-8■□□□□ 10.5
U2AF1Q01081 LARS-209ENST00000507095 384 ntTSL 37.42□□□□□ -1.227e-8■□□□□ 10.5
U2AF1Q01081 HNRNPH1-220ENST00000513225 805 ntTSL 419.07■□□□□ 0.646e-9■□□□□ 10.5
U2AF1Q01081 HNRNPH1-249ENST00000524180 997 ntTSL 519.07■□□□□ 0.645e-9■□□□□ 10.5
U2AF1Q01081 HNRNPH1-209ENST00000504348 594 ntTSL 417.9■□□□□ 0.466e-9■□□□□ 10.5
U2AF1Q01081 DNMT1-216ENST00000588952 841 ntTSL 526.77■■□□□ 1.887e-7■□□□□ 10.4
U2AF1Q01081 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC16.37■□□□□ 0.217e-7■□□□□ 10.4
U2AF1Q01081 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.197e-7■□□□□ 10.4
U2AF1Q01081 DNMT1-228ENST00000592705 5215 ntTSL 1 (best)16.06■□□□□ 0.167e-7■□□□□ 10.4
U2AF1Q01081 DNMT1-211ENST00000586988 711 ntTSL 515.71■□□□□ 0.117e-7■□□□□ 10.4
U2AF1Q01081 DNMT1-202ENST00000359526 5206 ntTSL 1 (best) BASIC15.32■□□□□ 0.047e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC20.38■□□□□ 0.854e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC18.59■□□□□ 0.574e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC18.46■□□□□ 0.554e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-205ENST00000544137 3047 ntTSL 1 (best) BASIC14.22□□□□□ -0.134e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-202ENST00000343619 4128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.44e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-201ENST00000264649 4110 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.454e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-212ENST00000587375 546 ntTSL 411.06□□□□□ -0.644e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-224ENST00000592324 585 ntTSL 49.08□□□□□ -0.964e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-222ENST00000589727 664 ntTSL 58.96□□□□□ -0.984e-7■□□□□ 10.4
U2AF1Q01081 ATP6V0A1-216ENST00000587882 780 ntTSL 24.48□□□□□ -1.694e-7■□□□□ 10.4
U2AF1Q01081 TCF25-224ENST00000570116 1947 ntTSL 520.39■□□□□ 0.855e-9■□□□□ 10.4
U2AF1Q01081 TCF25-210ENST00000563484 468 ntTSL 214.6□□□□□ -0.075e-9■□□□□ 10.4
U2AF1Q01081 ABCD3-204ENST00000468860 661 ntTSL 324.24■■□□□ 1.473e-6■□□□□ 10.4
U2AF1Q01081 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC16.15■□□□□ 0.183e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-204ENST00000427463 582 ntTSL 328.15■■■□□ 2.13e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-210ENST00000482726 538 ntTSL 428.15■■■□□ 2.13e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.733e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-203ENST00000419774 589 ntTSL 522.58■■□□□ 1.213e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-211ENST00000484141 566 ntTSL 222.39■■□□□ 1.173e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.13e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-205ENST00000430644 2621 ntTSL 221.74■■□□□ 1.073e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-206ENST00000433814 639 ntTSL 420.82■□□□□ 0.923e-6■□□□□ 10.4
U2AF1Q01081 PCGF3-207ENST00000440452 3609 ntTSL 215.91■□□□□ 0.143e-6■□□□□ 10.4
U2AF1Q01081 TUBE1-208ENST00000604743 959 ntTSL 319.31■□□□□ 0.683e-6■□□□□ 10.4
U2AF1Q01081 TUBE1-211ENST00000605457 1645 ntTSL 519.02■□□□□ 0.643e-6■□□□□ 10.4
U2AF1Q01081 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.381e-18■□□□□ 10.4
U2AF1Q01081 TUBE1-202ENST00000368662 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.213e-6■□□□□ 10.4
U2AF1Q01081 TUBE1-207ENST00000604689 3610 nt8.72□□□□□ -1.013e-6■□□□□ 10.4
U2AF1Q01081 TUBE1-209ENST00000604814 1784 ntTSL 56.56□□□□□ -1.363e-6■□□□□ 10.4
U2AF1Q01081 TUBE1-203ENST00000441191 625 ntTSL 55.03□□□□□ -1.63e-6■□□□□ 10.4
U2AF1Q01081 SLC38A10-206ENST00000540966 896 ntTSL 322.7■■□□□ 1.224e-9■□□□□ 10.4
U2AF1Q01081 SLC38A10-211ENST00000576151 774 ntTSL 220.95■□□□□ 0.944e-9■□□□□ 10.4
U2AF1Q01081 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.724e-9■□□□□ 10.4
U2AF1Q01081 SLC38A10-207ENST00000542075 2903 ntTSL 218.61■□□□□ 0.574e-9■□□□□ 10.4
U2AF1Q01081 AP1G2-231ENST00000557189 678 ntTSL 221.78■■□□□ 1.083e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-226ENST00000556843 562 ntTSL 418.88■□□□□ 0.613e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-208ENST00000553756 656 ntTSL 317.65■□□□□ 0.423e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-234ENST00000557619 1004 ntTSL 217.59■□□□□ 0.413e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-209ENST00000554069 755 ntTSL 316.93■□□□□ 0.33e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-233ENST00000557482 728 ntTSL 516.93■□□□□ 0.33e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-220ENST00000555896 927 ntTSL 1 (best)14.89□□□□□ -0.033e-8■□□□□ 10.4
U2AF1Q01081 AP1G2-210ENST00000554312 635 ntTSL 211.56□□□□□ -0.563e-8■□□□□ 10.4
U2AF1Q01081 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.791e-10■□□□□ 10.4
U2AF1Q01081 CFB-272ENST00000452035 1866 ntTSL 220.91■□□□□ 0.947e-8■□□□□ 10.4
U2AF1Q01081 CFB-274ENST00000461483 1277 ntTSL 515.22■□□□□ 0.037e-8■□□□□ 10.4
U2AF1Q01081 CFB-271ENST00000425368 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.117e-8■□□□□ 10.4
U2AF1Q01081 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC14.13□□□□□ -0.157e-8■□□□□ 10.4
U2AF1Q01081 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.337e-8■□□□□ 10.4
U2AF1Q01081 HNRNPH1-228ENST00000515714 690 ntTSL 425.12■■□□□ 1.612e-9■□□□□ 10.4
U2AF1Q01081 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC22.25■■□□□ 1.152e-9■□□□□ 10.4
U2AF1Q01081 HNRNPH1-208ENST00000503664 569 ntTSL 422.25■■□□□ 1.152e-9■□□□□ 10.4
U2AF1Q01081 HNRNPH1-219ENST00000512273 501 ntTSL 411.25□□□□□ -0.612e-9■□□□□ 10.4
U2AF1Q01081 TM4SF1-203ENST00000493298 702 ntTSL 412.05□□□□□ -0.482e-13■□□□□ 10.4
U2AF1Q01081 TM4SF1-204ENST00000493348 976 ntTSL 210.85□□□□□ -0.672e-13■□□□□ 10.4
U2AF1Q01081 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.82e-13■□□□□ 10.4
U2AF1Q01081 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC6.39□□□□□ -1.392e-13■□□□□ 10.4
U2AF1Q01081 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC18.02■□□□□ 0.484e-11■□□□□ 10.3
U2AF1Q01081 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.24e-11■□□□□ 10.3
U2AF1Q01081 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.184e-11■□□□□ 10.3
U2AF1Q01081 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.184e-11■□□□□ 10.3
U2AF1Q01081 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC13.51□□□□□ -0.254e-11■□□□□ 10.3
U2AF1Q01081 ARFGAP2-227ENST00000533243 1558 ntTSL 227.17■■□□□ 1.949e-10■□□□□ 10.3
U2AF1Q01081 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC23.31■■□□□ 1.329e-10■□□□□ 10.3
U2AF1Q01081 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC20.59■□□□□ 0.899e-10■□□□□ 10.3
U2AF1Q01081 ARFGAP2-201ENST00000395449 1772 ntTSL 517.94■□□□□ 0.469e-10■□□□□ 10.3
U2AF1Q01081 ARFGAP2-205ENST00000524782 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.079e-10■□□□□ 10.3
U2AF1Q01081 SKIV2L-207ENST00000471818 706 ntTSL 521.53■■□□□ 1.041e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-209ENST00000483553 1307 ntTSL 521.29■■□□□ 11e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-213ENST00000491994 866 ntTSL 220.51■□□□□ 0.871e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-206ENST00000470453 455 ntTSL 319.79■□□□□ 0.761e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-204ENST00000465703 4507 ntTSL 1 (best)18.96■□□□□ 0.631e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-208ENST00000474839 3378 ntTSL 215.4■□□□□ 0.061e-11■□□□□ 10.3
U2AF1Q01081 SKIV2L-201ENST00000375394 3894 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.161e-11■□□□□ 10.3
U2AF1Q01081 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.969e-7■□□□□ 10.3
U2AF1Q01081 PCED1A-204ENST00000448755 1170 ntTSL 324.71■■□□□ 1.559e-7■□□□□ 10.3
U2AF1Q01081 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC24.67■■□□□ 1.549e-7■□□□□ 10.3
U2AF1Q01081 PCED1A-203ENST00000439542 1187 ntTSL 221.18■□□□□ 0.989e-7■□□□□ 10.3
U2AF1Q01081 CDS2-204ENST00000467923 783 ntTSL 331.79■■■□□ 2.688e-6■□□□□ 10.3
U2AF1Q01081 CDS2-202ENST00000450570 945 ntTSL 329.87■■■□□ 2.378e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-222ENST00000625209 389 ntTSL 520.47■□□□□ 0.878e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-227ENST00000626228 743 ntTSL 519.81■□□□□ 0.768e-6■□□□□ 10.3
Retrieved 100 of 10,096 protein–RNA pairs in 584.4 ms