RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 NISCHQ9Y2I1 1504 aa40.25■■■■■ 4.03
PSPC1-201ENST00000338910 CCDC180Q9P1Z9 1646 aa34.76■■■■□ 3.16
PSPC1-201ENST00000338910 ZCCHC6Q5VYS8 1495 aaKnown RBP33.86■■■■□ 3.01
PSPC1-201ENST00000338910 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
PSPC1-201ENST00000338910 SHROOM4Q9ULL8 1493 aa33.43■■■□□ 2.94
PSPC1-201ENST00000338910 DCAF1Q9Y4B6 1507 aa33.14■■■□□ 2.9
PSPC1-201ENST00000338910 ABCC9O60706 1549 aa32.84■■■□□ 2.85
PSPC1-201ENST00000338910 MYO15BQ96JP2 1530 aa32.57■■■□□ 2.8
PSPC1-201ENST00000338910 SUPT5HO00267 1087 aaKnown RBP32.52■■■□□ 2.8
PSPC1-201ENST00000338910 NACADO15069 1562 aa32.35■■■□□ 2.77
PSPC1-201ENST00000338910 SCRIBQ14160 1630 aa32.26■■■□□ 2.75
PSPC1-201ENST00000338910 RB1CC1Q8TDY2 1594 aa32.01■■■□□ 2.72
PSPC1-201ENST00000338910 UNC13AQ9UPW8 1703 aa31.45■■■□□ 2.63
PSPC1-201ENST00000338910 RSF1Q96T23 1441 aaPredicted RBP31.44■■■□□ 2.62
PSPC1-201ENST00000338910 CECR2Q9BXF3 1484 aa31.38■■■□□ 2.61
PSPC1-201ENST00000338910 CHIC1Q5VXU3 224 aa31.3■■■□□ 2.6
PSPC1-201ENST00000338910 HRCP23327 699 aa31.22■■■□□ 2.59
PSPC1-201ENST00000338910 MROH2BQ7Z745 1585 aa31.19■■■□□ 2.58
PSPC1-201ENST00000338910 PABPN1Q86U42 306 aaKnown RBP eCLIP31.16■■■□□ 2.58
PSPC1-201ENST00000338910 BICRAQ9NZM4 1560 aa31.11■■■□□ 2.57
PSPC1-201ENST00000338910 BAZ1AQ9NRL2 1556 aaPredicted RBP31.02■■■□□ 2.56
PSPC1-201ENST00000338910 WIZO95785 1651 aa30.96■■■□□ 2.55
PSPC1-201ENST00000338910 SMARCA4P51532 1647 aa30.85■■■□□ 2.53
PSPC1-201ENST00000338910 PCGF6Q9BYE7 350 aa30.62■■■□□ 2.49
PSPC1-201ENST00000338910 TOP2AP11388 1531 aaKnown RBP30.53■■■□□ 2.48
PSPC1-201ENST00000338910 PPARGC1BQ86YN6 1023 aaKnown RBP30.43■■■□□ 2.46
PSPC1-201ENST00000338910 TRIM41Q8WV44 630 aa30.38■■■□□ 2.45
PSPC1-201ENST00000338910 PEG3Q9GZU2 1588 aa30.38■■■□□ 2.45
PSPC1-201ENST00000338910 LOC105371045A0A1W2PR82 267 aa30.34■■■□□ 2.45
PSPC1-201ENST00000338910 CCDC88BA6NC98 1476 aa30.34■■■□□ 2.45
PSPC1-201ENST00000338910 SMARCA2P51531 1590 aa30.31■■■□□ 2.44
PSPC1-201ENST00000338910 ATAD2BQ9ULI0 1458 aa30.29■■■□□ 2.44
PSPC1-201ENST00000338910 EIF4G1Q04637 1599 aaKnown RBP30.16■■■□□ 2.42
PSPC1-201ENST00000338910 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
PSPC1-201ENST00000338910 FAM9AQ8IZU1 332 aaPredicted RBP30.06■■■□□ 2.4
PSPC1-201ENST00000338910 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
PSPC1-201ENST00000338910 ABCC8Q09428 1581 aa29.89■■■□□ 2.38
PSPC1-201ENST00000338910 TRIM26Q12899 539 aaPredicted RBP29.85■■■□□ 2.37
PSPC1-201ENST00000338910 HMGXB3Q12766 1538 aa29.84■■■□□ 2.37
PSPC1-201ENST00000338910 EHMT2Q96KQ7 1210 aa29.79■■■□□ 2.36
PSPC1-201ENST00000338910 PELP1Q8IZL8 1130 aaKnown RBP29.64■■■□□ 2.34
PSPC1-201ENST00000338910 CC2D2AQ9P2K1 1620 aa29.63■■■□□ 2.33
PSPC1-201ENST00000338910 WRNQ14191 1432 aaPredicted RBP eCLIP29.57■■■□□ 2.321e-6■■■■■ 58.5
PSPC1-201ENST00000338910 ZEB1P37275 1124 aaPredicted RBP29.54■■■□□ 2.32
PSPC1-201ENST00000338910 SYNJ1O43426 1573 aa29.44■■■□□ 2.3
PSPC1-201ENST00000338910 SOGA1O94964 1423 aa29.43■■■□□ 2.3
PSPC1-201ENST00000338910 CFTRP13569 1480 aa29.38■■■□□ 2.29
PSPC1-201ENST00000338910 RUSC2Q8N2Y8 1516 aa29.31■■■□□ 2.28
PSPC1-201ENST00000338910 SCAF1Q9H7N4 1312 aaKnown RBP29.28■■■□□ 2.28
PSPC1-201ENST00000338910 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
PSPC1-201ENST00000338910 EEA1Q15075 1411 aa29.22■■■□□ 2.27
PSPC1-201ENST00000338910 CSRNP3Q8WYN3 585 aa29.22■■■□□ 2.27
PSPC1-201ENST00000338910 TOP2BQ02880 1626 aa29.22■■■□□ 2.27
PSPC1-201ENST00000338910 BIVM-ERCC5R4GMW8 1640 aa29.14■■■□□ 2.26
PSPC1-201ENST00000338910 PRDM2Q13029 1718 aa29.13■■■□□ 2.25
PSPC1-201ENST00000338910 CUX1P39880 1505 aa29.11■■■□□ 2.25
PSPC1-201ENST00000338910 UBTFP17480 764 aaKnown RBP29.04■■■□□ 2.24
PSPC1-201ENST00000338910 DNAJC5BQ9UF47 199 aa29.03■■■□□ 2.24
PSPC1-201ENST00000338910 TNIKQ9UKE5 1360 aa28.97■■■□□ 2.23
PSPC1-201ENST00000338910 NESP48681 1621 aa28.97■■■□□ 2.23
PSPC1-201ENST00000338910 CEP162Q5TB80 1403 aa28.93■■■□□ 2.22
PSPC1-201ENST00000338910 FANCD2Q9BXW9 1451 aa28.92■■■□□ 2.22
PSPC1-201ENST00000338910 GOLGA3Q08378 1498 aa28.92■■■□□ 2.22
PSPC1-201ENST00000338910 CEP164Q9UPV0 1460 aa28.88■■■□□ 2.21
PSPC1-201ENST00000338910 KIF21BO75037 1637 aa28.84■■■□□ 2.21
PSPC1-201ENST00000338910 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
PSPC1-201ENST00000338910 RAPGEF2Q9Y4G8 1499 aa28.77■■■□□ 2.2
PSPC1-201ENST00000338910 KIF27Q86VH2 1401 aa28.76■■■□□ 2.19
PSPC1-201ENST00000338910 FGD5Q6ZNL6 1462 aa28.75■■■□□ 2.19
PSPC1-201ENST00000338910 ACIN1Q9UKV3 1341 aaKnown RBP28.71■■■□□ 2.19
PSPC1-201ENST00000338910 CUX2O14529 1486 aa28.66■■■□□ 2.18
PSPC1-201ENST00000338910 PRXQ9BXM0 1461 aa28.66■■■□□ 2.18
PSPC1-201ENST00000338910 DNMBPQ6XZF7 1577 aa28.65■■■□□ 2.18
PSPC1-201ENST00000338910 TTBK1Q5TCY1 1321 aaPredicted RBP28.64■■■□□ 2.18
PSPC1-201ENST00000338910 TOPBP1Q92547 1522 aa28.64■■■□□ 2.18
PSPC1-201ENST00000338910 PDS5BQ9NTI5 1447 aa28.63■■■□□ 2.17
PSPC1-201ENST00000338910 RANGAP1P46060 587 aaPredicted RBP28.6■■■□□ 2.17
PSPC1-201ENST00000338910 NEUROD1Q13562 356 aa28.6■■■□□ 2.17
PSPC1-201ENST00000338910 ERICH3Q5RHP9 1530 aa28.58■■■□□ 2.17
PSPC1-201ENST00000338910 CLIP1P30622 1438 aa28.56■■■□□ 2.16
PSPC1-201ENST00000338910 POLA1P09884 1462 aaPredicted RBP28.56■■■□□ 2.16
PSPC1-201ENST00000338910 URB2Q14146 1524 aaKnown RBP28.55■■■□□ 2.16
PSPC1-201ENST00000338910 RAD54L2Q9Y4B4 1467 aa28.54■■■□□ 2.16
PSPC1-201ENST00000338910 IGF1RP08069 1367 aa28.53■■■□□ 2.16
PSPC1-201ENST00000338910 KIF21AQ7Z4S6 1674 aa28.51■■■□□ 2.15
PSPC1-201ENST00000338910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.49■■■□□ 2.15
PSPC1-201ENST00000338910 CCER1Q8TC90 406 aaPredicted RBP28.44■■■□□ 2.14
PSPC1-201ENST00000338910 ABCA10Q8WWZ4 1543 aa28.44■■■□□ 2.14
PSPC1-201ENST00000338910 MYT1Q01538 1121 aa28.4■■■□□ 2.14
PSPC1-201ENST00000338910 CARMIL1Q5VZK9 1371 aa28.38■■■□□ 2.13
PSPC1-201ENST00000338910 GTF3C3Q9Y5Q9 886 aa28.38■■■□□ 2.13
PSPC1-201ENST00000338910 CENPBP07199 599 aaPredicted RBP28.37■■■□□ 2.13
PSPC1-201ENST00000338910 DIEXFQ68CQ4 756 aaKnown RBP28.37■■■□□ 2.13
PSPC1-201ENST00000338910 VPS8Q8N3P4 1428 aa28.34■■■□□ 2.13
PSPC1-201ENST00000338910 WDR97A6NE52 1622 aa28.26■■■□□ 2.11
PSPC1-201ENST00000338910 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.11
PSPC1-201ENST00000338910 APLP2Q06481 763 aa28.26■■■□□ 2.11
PSPC1-201ENST00000338910 MRC2Q9UBG0 1479 aa28.22■■■□□ 2.11
PSPC1-201ENST00000338910 ARAP1Q96P48 1450 aa28.19■■■□□ 2.1
PSPC1-201ENST00000338910 ABCA5Q8WWZ7 1642 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms