RNA–Protein interactions for RNA: ENST00000233242.5

APOB-201, Transcript of apolipoprotein B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene APOB, Length 14,121 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-201ENST00000233242 PELP1Q8IZL8 1130 aaKnown RBP13.44□□□□□ -0.26
APOB-201ENST00000233242 MYT1Q01538 1121 aa13.2□□□□□ -0.3
APOB-201ENST00000233242 DCAF8L2P0C7V8 631 aa13.18□□□□□ -0.3
APOB-201ENST00000233242 SUPT5HO00267 1087 aaKnown RBP12.98□□□□□ -0.33
APOB-201ENST00000233242 CENPBP07199 599 aaPredicted RBP12.84□□□□□ -0.35
APOB-201ENST00000233242 ZEB1P37275 1124 aaPredicted RBP12.82□□□□□ -0.36
APOB-201ENST00000233242 NISCHQ9Y2I1 1504 aa12.81□□□□□ -0.36
APOB-201ENST00000233242 CCER1Q8TC90 406 aaPredicted RBP12.75□□□□□ -0.37
APOB-201ENST00000233242 ERICH6Q7L0X2 663 aa12.66□□□□□ -0.38
APOB-201ENST00000233242 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
APOB-201ENST00000233242 APLP2Q06481 763 aa12.62□□□□□ -0.39
APOB-201ENST00000233242 SHROOM4Q9ULL8 1493 aa12.54□□□□□ -0.4
APOB-201ENST00000233242 NEFLP07196 543 aa12.42□□□□□ -0.42
APOB-201ENST00000233242 EHMT2Q96KQ7 1210 aa12.33□□□□□ -0.44
APOB-201ENST00000233242 HRCP23327 699 aa12.29□□□□□ -0.44
APOB-201ENST00000233242 YTHDC1Q96MU7 727 aaKnown RBP12.21□□□□□ -0.45
APOB-201ENST00000233242 FAM9AQ8IZU1 332 aaPredicted RBP12.21□□□□□ -0.45
APOB-201ENST00000233242 TRIM26Q12899 539 aaPredicted RBP12.18□□□□□ -0.46
APOB-201ENST00000233242 TRIM41Q8WV44 630 aa12.13□□□□□ -0.47
APOB-201ENST00000233242 TTBK1Q5TCY1 1321 aaPredicted RBP12.11□□□□□ -0.47
APOB-201ENST00000233242 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
APOB-201ENST00000233242 UBTFP17480 764 aaKnown RBP11.95□□□□□ -0.5
APOB-201ENST00000233242 RTL5Q5HYW3 569 aaPredicted RBP11.95□□□□□ -0.5
APOB-201ENST00000233242 DIEXFQ68CQ4 756 aaKnown RBP11.83□□□□□ -0.52
APOB-201ENST00000233242 RANGAP1P46060 587 aaPredicted RBP11.77□□□□□ -0.53
APOB-201ENST00000233242 ZNF316A6NFI3 1004 aaPredicted RBP11.76□□□□□ -0.53
APOB-201ENST00000233242 CLSPNQ9HAW4 1339 aa11.75□□□□□ -0.53
APOB-201ENST00000233242 ATP1B4Q9UN42 357 aaPredicted RBP11.73□□□□□ -0.53
APOB-201ENST00000233242 CHIC1Q5VXU3 224 aa11.73□□□□□ -0.53
APOB-201ENST00000233242 PPARGC1BQ86YN6 1023 aaKnown RBP11.72□□□□□ -0.53
APOB-201ENST00000233242 GTF3C3Q9Y5Q9 886 aa11.71□□□□□ -0.53
APOB-201ENST00000233242 MYT1LQ9UL68 1186 aa11.68□□□□□ -0.54
APOB-201ENST00000233242 ACIN1Q9UKV3 1341 aaKnown RBP11.64□□□□□ -0.55
APOB-201ENST00000233242 CDK11AQ9UQ88 783 aaPredicted RBP11.63□□□□□ -0.55
APOB-201ENST00000233242 LOC105371045A0A1W2PR82 267 aa11.59□□□□□ -0.55
APOB-201ENST00000233242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.57□□□□□ -0.56
APOB-201ENST00000233242 HNRNPUL2Q1KMD3 747 aaKnown RBP11.56□□□□□ -0.56
APOB-201ENST00000233242 GLIPR1L2Q4G1C9 344 aa11.51□□□□□ -0.57
APOB-201ENST00000233242 ANP32CO43423 234 aa11.5□□□□□ -0.57
APOB-201ENST00000233242 ANP32AP39687 249 aaKnown RBP11.5□□□□□ -0.57
APOB-201ENST00000233242 POLR3GLQ9BT43 218 aa11.49□□□□□ -0.57
APOB-201ENST00000233242 ITGAEP38570 1179 aa11.48□□□□□ -0.57
APOB-201ENST00000233242 BCANQ96GW7 911 aa11.44□□□□□ -0.58
APOB-201ENST00000233242 ANP32BQ92688 251 aaKnown RBP11.35□□□□□ -0.59
APOB-201ENST00000233242 EIF5BO60841 1220 aaKnown RBP11.34□□□□□ -0.59
APOB-201ENST00000233242 DCAF1Q9Y4B6 1507 aa11.33□□□□□ -0.6
APOB-201ENST00000233242 ZBTB47Q9UFB7 747 aaPredicted RBP11.31□□□□□ -0.6
APOB-201ENST00000233242 CNGB1Q14028 1251 aaPredicted RBP11.26□□□□□ -0.61
APOB-201ENST00000233242 FAM50AQ14320 339 aaKnown RBP11.26□□□□□ -0.61
APOB-201ENST00000233242 NEUROD1Q13562 356 aa11.24□□□□□ -0.61
APOB-201ENST00000233242 SCAF1Q9H7N4 1312 aaKnown RBP11.22□□□□□ -0.61
APOB-201ENST00000233242 FKBP8Q14318 412 aa11.21□□□□□ -0.61
APOB-201ENST00000233242 CANXP27824 592 aaKnown RBP11.21□□□□□ -0.62
APOB-201ENST00000233242 TRIM52Q96A61 297 aa11.2□□□□□ -0.62
APOB-201ENST00000233242 UPF2Q9HAU5 1272 aaKnown RBP11.2□□□□□ -0.62
APOB-201ENST00000233242 SLC4A1APQ9BWU0 796 aaKnown RBP11.18□□□□□ -0.62
APOB-201ENST00000233242 ANP32EQ9BTT0 268 aa11.16□□□□□ -0.62
APOB-201ENST00000233242 NPM2Q86SE8 214 aaKnown RBP11.15□□□□□ -0.63
APOB-201ENST00000233242 HSP90AA1P07900 732 aaKnown RBP11.12□□□□□ -0.63
APOB-201ENST00000233242 NEFMP07197 916 aa11.1□□□□□ -0.63
APOB-201ENST00000233242 CCDC136Q96JN2 1154 aa11.09□□□□□ -0.63
APOB-201ENST00000233242 HNRNPUQ00839 825 aaKnown RBP eCLIP11.08□□□□□ -0.64
APOB-201ENST00000233242 NBR1Q14596 966 aa11.08□□□□□ -0.64
APOB-201ENST00000233242 DDRGK1Q96HY6 314 aa11.07□□□□□ -0.64
APOB-201ENST00000233242 ZNF326Q5BKZ1 582 aaKnown RBP11.06□□□□□ -0.64
APOB-201ENST00000233242 TNNT2P45379 298 aaPredicted RBP11.05□□□□□ -0.64
APOB-201ENST00000233242 TONSLQ96HA7 1378 aa11.05□□□□□ -0.64
APOB-201ENST00000233242 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.04□□□□□ -0.64
APOB-201ENST00000233242 ERICH6BQ5W0A0 696 aa11.04□□□□□ -0.64
APOB-201ENST00000233242 CSRNP3Q8WYN3 585 aa11.02□□□□□ -0.64
APOB-201ENST00000233242 BECN1Q14457 450 aa11.01□□□□□ -0.65
APOB-201ENST00000233242 PPM1GO15355 546 aaPredicted RBP10.99□□□□□ -0.65
APOB-201ENST00000233242 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
APOB-201ENST00000233242 DDX10Q13206 875 aaKnown RBP10.97□□□□□ -0.65
APOB-201ENST00000233242 MIER1Q8N108 512 aa10.97□□□□□ -0.65
APOB-201ENST00000233242 TRIM44Q96DX7 344 aaPredicted RBP10.95□□□□□ -0.66
APOB-201ENST00000233242 GOLGA6L22H0YM25 854 aa10.93□□□□□ -0.66
APOB-201ENST00000233242 FAM9BQ8IZU0 186 aa10.92□□□□□ -0.66
APOB-201ENST00000233242 BCL11AQ9H165 835 aa10.92□□□□□ -0.66
APOB-201ENST00000233242 TMC1Q8TDI8 760 aa10.92□□□□□ -0.66
APOB-201ENST00000233242 MRS2Q9HD23 443 aa10.92□□□□□ -0.66
APOB-201ENST00000233242 NOP58Q9Y2X3 529 aaKnown RBP10.87□□□□□ -0.67
APOB-201ENST00000233242 NCLP19338 710 aaKnown RBP10.86□□□□□ -0.67
APOB-201ENST00000233242 PPP4R2Q9NY27 417 aa10.85□□□□□ -0.67
APOB-201ENST00000233242 MYH16Q9H6N6 1097 aa10.83□□□□□ -0.68
APOB-201ENST00000233242 WDR43Q15061 677 aaKnown RBP eCLIP10.82□□□□□ -0.68
APOB-201ENST00000233242 NAP1L5Q96NT1 182 aaPredicted RBP10.82□□□□□ -0.68
APOB-201ENST00000233242 ARXQ96QS3 562 aa10.82□□□□□ -0.68
APOB-201ENST00000233242 SUPT16HQ9Y5B9 1047 aaKnown RBP10.8□□□□□ -0.68
APOB-201ENST00000233242 L1TD1Q5T7N2 865 aaKnown RBP10.79□□□□□ -0.68
APOB-201ENST00000233242 EIF4G2P78344 907 aaKnown RBP eCLIP10.79□□□□□ -0.68
APOB-201ENST00000233242 PTMAP06454 111 aaKnown RBP10.78□□□□□ -0.68
APOB-201ENST00000233242 DEKP35659 375 aaKnown RBP10.77□□□□□ -0.68
APOB-201ENST00000233242 EEA1Q15075 1411 aa10.77□□□□□ -0.69
APOB-201ENST00000233242 CDK11BP21127 795 aaKnown RBP10.76□□□□□ -0.69
APOB-201ENST00000233242 IRX6P78412 446 aaPredicted RBP10.76□□□□□ -0.69
APOB-201ENST00000233242 SLC24A1O60721 1099 aa10.75□□□□□ -0.69
APOB-201ENST00000233242 CLIP1P30622 1438 aa10.74□□□□□ -0.69
APOB-201ENST00000233242 DNTTIP2Q5QJE6 756 aaKnown RBP10.72□□□□□ -0.69
APOB-201ENST00000233242 CASC1Q6TDU7 716 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms