RNA–Protein interactions for RNA: ENST00000577716.5

RNF43-203, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 4,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-203ENST00000577716 NISCHQ9Y2I1 1504 aa19.38■□□□□ 0.69
RNF43-203ENST00000577716 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
RNF43-203ENST00000577716 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
RNF43-203ENST00000577716 SHROOM4Q9ULL8 1493 aa18.06■□□□□ 0.48
RNF43-203ENST00000577716 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
RNF43-203ENST00000577716 PCGF6Q9BYE7 350 aa17.33■□□□□ 0.37
RNF43-203ENST00000577716 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
RNF43-203ENST00000577716 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
RNF43-203ENST00000577716 TTBK1Q5TCY1 1321 aaPredicted RBP16.91■□□□□ 0.3
RNF43-203ENST00000577716 APLP2Q06481 763 aa16.9■□□□□ 0.3
RNF43-203ENST00000577716 ZEB1P37275 1124 aaPredicted RBP16.84■□□□□ 0.29
RNF43-203ENST00000577716 PELP1Q8IZL8 1130 aaKnown RBP16.78■□□□□ 0.28
RNF43-203ENST00000577716 CCER1Q8TC90 406 aaPredicted RBP16.74■□□□□ 0.27
RNF43-203ENST00000577716 HRCP23327 699 aa16.72■□□□□ 0.27
RNF43-203ENST00000577716 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
RNF43-203ENST00000577716 CENPBP07199 599 aaPredicted RBP16.66■□□□□ 0.26
RNF43-203ENST00000577716 TRIM26Q12899 539 aaPredicted RBP16.62■□□□□ 0.25
RNF43-203ENST00000577716 LOC105371045A0A1W2PR82 267 aa16.6■□□□□ 0.25
RNF43-203ENST00000577716 RANGAP1P46060 587 aaPredicted RBP16.59■□□□□ 0.25
RNF43-203ENST00000577716 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
RNF43-203ENST00000577716 UBTFP17480 764 aaKnown RBP16.55■□□□□ 0.24
RNF43-203ENST00000577716 YTHDC1Q96MU7 727 aaKnown RBP16.36■□□□□ 0.21
RNF43-203ENST00000577716 ATP1B4Q9UN42 357 aaPredicted RBP16.28■□□□□ 0.2
RNF43-203ENST00000577716 ABCC9O60706 1549 aa16.16■□□□□ 0.18
RNF43-203ENST00000577716 ZCCHC6Q5VYS8 1495 aaKnown RBP16.16■□□□□ 0.18
RNF43-203ENST00000577716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.12■□□□□ 0.17
RNF43-203ENST00000577716 HNRNPUL2Q1KMD3 747 aaKnown RBP16.1■□□□□ 0.17
RNF43-203ENST00000577716 NEFLP07196 543 aa16.08■□□□□ 0.16
RNF43-203ENST00000577716 ERICH6Q7L0X2 663 aa16.08■□□□□ 0.16
RNF43-203ENST00000577716 MYT1Q01538 1121 aa16.02■□□□□ 0.16
RNF43-203ENST00000577716 ITGAEP38570 1179 aa16.02■□□□□ 0.15
RNF43-203ENST00000577716 DIEXFQ68CQ4 756 aaKnown RBP16■□□□□ 0.15
RNF43-203ENST00000577716 CCDC180Q9P1Z9 1646 aa15.95■□□□□ 0.14
RNF43-203ENST00000577716 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
RNF43-203ENST00000577716 SCRIBQ14160 1630 aa15.78■□□□□ 0.12
RNF43-203ENST00000577716 GTF3C3Q9Y5Q9 886 aa15.76■□□□□ 0.11
RNF43-203ENST00000577716 DCAF1Q9Y4B6 1507 aa15.69■□□□□ 0.1
RNF43-203ENST00000577716 ZNF316A6NFI3 1004 aaPredicted RBP15.65■□□□□ 0.1
RNF43-203ENST00000577716 POLR3GLQ9BT43 218 aa15.65■□□□□ 0.1
RNF43-203ENST00000577716 MYO15BQ96JP2 1530 aa15.63■□□□□ 0.09
RNF43-203ENST00000577716 ACIN1Q9UKV3 1341 aaKnown RBP15.62■□□□□ 0.09
RNF43-203ENST00000577716 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
RNF43-203ENST00000577716 FAM50AQ14320 339 aaKnown RBP15.61■□□□□ 0.09
RNF43-203ENST00000577716 CNGB1Q14028 1251 aaPredicted RBP15.59■□□□□ 0.09
RNF43-203ENST00000577716 NEUROD1Q13562 356 aa15.55■□□□□ 0.08
RNF43-203ENST00000577716 RSF1Q96T23 1441 aaPredicted RBP15.52■□□□□ 0.08
RNF43-203ENST00000577716 BCANQ96GW7 911 aa15.48■□□□□ 0.07
RNF43-203ENST00000577716 TRIM52Q96A61 297 aa15.41■□□□□ 0.06
RNF43-203ENST00000577716 ANP32CO43423 234 aa15.39■□□□□ 0.05
RNF43-203ENST00000577716 DAXXQ9UER7 740 aaPredicted RBP15.37■□□□□ 0.05
RNF43-203ENST00000577716 MYT1LQ9UL68 1186 aa15.33■□□□□ 0.04
RNF43-203ENST00000577716 SCAF1Q9H7N4 1312 aaKnown RBP15.33■□□□□ 0.04
RNF43-203ENST00000577716 P3H3Q8IVL6 736 aa15.32■□□□□ 0.04
RNF43-203ENST00000577716 NACADO15069 1562 aa15.29■□□□□ 0.04
RNF43-203ENST00000577716 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.04
RNF43-203ENST00000577716 RB1CC1Q8TDY2 1594 aa15.26■□□□□ 0.03
RNF43-203ENST00000577716 RTL5Q5HYW3 569 aaPredicted RBP15.23■□□□□ 0.03
RNF43-203ENST00000577716 ZNF326Q5BKZ1 582 aaKnown RBP15.23■□□□□ 0.03
RNF43-203ENST00000577716 CDK11AQ9UQ88 783 aaPredicted RBP15.22■□□□□ 0.03
RNF43-203ENST00000577716 MIER1Q8N108 512 aa15.19■□□□□ 0.02
RNF43-203ENST00000577716 DDX10Q13206 875 aaKnown RBP15.16■□□□□ 0.02
RNF43-203ENST00000577716 CLSPNQ9HAW4 1339 aa15.15■□□□□ 0.02
RNF43-203ENST00000577716 FKBP8Q14318 412 aa15.14■□□□□ 0.01
RNF43-203ENST00000577716 ARID3CA6NKF2 412 aa15.13■□□□□ 0.01
RNF43-203ENST00000577716 SLC4A1APQ9BWU0 796 aaKnown RBP15.13■□□□□ 0.01
RNF43-203ENST00000577716 CLIP1P30622 1438 aa15.11■□□□□ 0.01
RNF43-203ENST00000577716 CEP162Q5TB80 1403 aa15.11■□□□□ 0.01
RNF43-203ENST00000577716 TONSLQ96HA7 1378 aa15.09■□□□□ 0.01
RNF43-203ENST00000577716 MROH2BQ7Z745 1585 aa15.08■□□□□ 0.01
RNF43-203ENST00000577716 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
RNF43-203ENST00000577716 HNRNPUQ00839 825 aaKnown RBP eCLIP15.05■□□□□ -02e-6■■□□□ 12.8
RNF43-203ENST00000577716 FBLN2P98095 1184 aa15.04■□□□□ -0
RNF43-203ENST00000577716 EEA1Q15075 1411 aa15.03■□□□□ -0
RNF43-203ENST00000577716 WRNQ14191 1432 aaPredicted RBP eCLIP15.02■□□□□ -0
RNF43-203ENST00000577716 GOLGA3Q08378 1498 aa15□□□□□ -0.01
RNF43-203ENST00000577716 TNIKQ9UKE5 1360 aa14.99□□□□□ -0.01
RNF43-203ENST00000577716 ZNF777Q9ULD5 760 aaPredicted RBP14.98□□□□□ -0.01
RNF43-203ENST00000577716 HIRIP3Q9BW71 556 aaPredicted RBP14.97□□□□□ -0.01
RNF43-203ENST00000577716 FAM9BQ8IZU0 186 aa14.95□□□□□ -0.02
RNF43-203ENST00000577716 BAZ1BQ9UIG0 1483 aaKnown RBP14.95□□□□□ -0.02
RNF43-203ENST00000577716 CHIC2Q9UKJ5 165 aa14.94□□□□□ -0.02
RNF43-203ENST00000577716 SOGA1O94964 1423 aa14.93□□□□□ -0.02
RNF43-203ENST00000577716 ANP32AP39687 249 aaKnown RBP14.92□□□□□ -0.02
RNF43-203ENST00000577716 CCDC88BA6NC98 1476 aa14.9□□□□□ -0.02
RNF43-203ENST00000577716 WIZO95785 1651 aa14.88□□□□□ -0.03
RNF43-203ENST00000577716 ABCC8Q09428 1581 aa14.87□□□□□ -0.03
RNF43-203ENST00000577716 MTUS2Q5JR59 1369 aa14.87□□□□□ -0.03
RNF43-203ENST00000577716 NPM2Q86SE8 214 aaKnown RBP14.86□□□□□ -0.03
RNF43-203ENST00000577716 CEP164Q9UPV0 1460 aa14.85□□□□□ -0.03
RNF43-203ENST00000577716 MRS2Q9HD23 443 aa14.84□□□□□ -0.03
RNF43-203ENST00000577716 IRX6P78412 446 aaPredicted RBP14.83□□□□□ -0.03
RNF43-203ENST00000577716 CANXP27824 592 aaKnown RBP14.82□□□□□ -0.04
RNF43-203ENST00000577716 SALL2Q9Y467 1007 aaPredicted RBP14.81□□□□□ -0.04
RNF43-203ENST00000577716 TMC1Q8TDI8 760 aa14.79□□□□□ -0.04
RNF43-203ENST00000577716 CCDC136Q96JN2 1154 aa14.79□□□□□ -0.04
RNF43-203ENST00000577716 EIF4G2P78344 907 aaKnown RBP eCLIP14.78□□□□□ -0.04
RNF43-203ENST00000577716 RRP7BPQ9NSQ0 103 aa14.78□□□□□ -0.04
RNF43-203ENST00000577716 KIF27Q86VH2 1401 aa14.76□□□□□ -0.05
RNF43-203ENST00000577716 SIN3AQ96ST3 1273 aa14.74□□□□□ -0.05
RNF43-203ENST00000577716 TOP2AP11388 1531 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms