RNA–Protein interactions for RNA: ENST00000474839.5

SKIV2L-208, Transcript of Ski2 like RNA helicase, humanhuman

TSL 2

Gene SKIV2L, Length 3,378 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKIV2L-208ENST00000474839 NISCHQ9Y2I1 1504 aa23.34■■□□□ 1.33
SKIV2L-208ENST00000474839 SHROOM4Q9ULL8 1493 aa21■□□□□ 0.95
SKIV2L-208ENST00000474839 SUPT5HO00267 1087 aaKnown RBP20.86■□□□□ 0.93
SKIV2L-208ENST00000474839 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
SKIV2L-208ENST00000474839 PCGF6Q9BYE7 350 aa20.16■□□□□ 0.82
SKIV2L-208ENST00000474839 HRCP23327 699 aa20.01■□□□□ 0.79
SKIV2L-208ENST00000474839 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
SKIV2L-208ENST00000474839 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
SKIV2L-208ENST00000474839 MYO15BQ96JP2 1530 aa19.83■□□□□ 0.77
SKIV2L-208ENST00000474839 CCDC180Q9P1Z9 1646 aa19.82■□□□□ 0.76
SKIV2L-208ENST00000474839 LOC105371045A0A1W2PR82 267 aa19.78■□□□□ 0.76
SKIV2L-208ENST00000474839 ABCC9O60706 1549 aa19.77■□□□□ 0.75
SKIV2L-208ENST00000474839 EHMT2Q96KQ7 1210 aa19.61■□□□□ 0.73
SKIV2L-208ENST00000474839 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
SKIV2L-208ENST00000474839 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
SKIV2L-208ENST00000474839 TRIM26Q12899 539 aaPredicted RBP19.29■□□□□ 0.68
SKIV2L-208ENST00000474839 TRIM41Q8WV44 630 aa19.13■□□□□ 0.65
SKIV2L-208ENST00000474839 PELP1Q8IZL8 1130 aaKnown RBP19.09■□□□□ 0.65
SKIV2L-208ENST00000474839 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
SKIV2L-208ENST00000474839 SCRIBQ14160 1630 aa19.02■□□□□ 0.63
SKIV2L-208ENST00000474839 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.632e-6■■■□□ 17.4
SKIV2L-208ENST00000474839 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
SKIV2L-208ENST00000474839 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
SKIV2L-208ENST00000474839 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.6
SKIV2L-208ENST00000474839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.82■□□□□ 0.6
SKIV2L-208ENST00000474839 CCER1Q8TC90 406 aaPredicted RBP18.77■□□□□ 0.6
SKIV2L-208ENST00000474839 MYT1Q01538 1121 aa18.71■□□□□ 0.59
SKIV2L-208ENST00000474839 NACADO15069 1562 aa18.68■□□□□ 0.58
SKIV2L-208ENST00000474839 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.57
SKIV2L-208ENST00000474839 RSF1Q96T23 1441 aaPredicted RBP18.61■□□□□ 0.57
SKIV2L-208ENST00000474839 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
SKIV2L-208ENST00000474839 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.56
SKIV2L-208ENST00000474839 YTHDC1Q96MU7 727 aaKnown RBP18.5■□□□□ 0.55
SKIV2L-208ENST00000474839 DIEXFQ68CQ4 756 aaKnown RBP18.47■□□□□ 0.55
SKIV2L-208ENST00000474839 GTF3C3Q9Y5Q9 886 aa18.47■□□□□ 0.55
SKIV2L-208ENST00000474839 ACIN1Q9UKV3 1341 aaKnown RBP18.45■□□□□ 0.54
SKIV2L-208ENST00000474839 CENPBP07199 599 aaPredicted RBP18.38■□□□□ 0.53
SKIV2L-208ENST00000474839 UBTFP17480 764 aaKnown RBP18.34■□□□□ 0.53
SKIV2L-208ENST00000474839 RANGAP1P46060 587 aaPredicted RBP18.34■□□□□ 0.53
SKIV2L-208ENST00000474839 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
SKIV2L-208ENST00000474839 HNRNPUL2Q1KMD3 747 aaKnown RBP18.25■□□□□ 0.51
SKIV2L-208ENST00000474839 UNC13AQ9UPW8 1703 aa18.21■□□□□ 0.51
SKIV2L-208ENST00000474839 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
SKIV2L-208ENST00000474839 ZNF316A6NFI3 1004 aaPredicted RBP18.1■□□□□ 0.49
SKIV2L-208ENST00000474839 WIZO95785 1651 aa18.09■□□□□ 0.49
SKIV2L-208ENST00000474839 MIER1Q8N108 512 aa18.04■□□□□ 0.48
SKIV2L-208ENST00000474839 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
SKIV2L-208ENST00000474839 APLP2Q06481 763 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 CEP162Q5TB80 1403 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 SOGA1O94964 1423 aa17.98■□□□□ 0.47
SKIV2L-208ENST00000474839 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
SKIV2L-208ENST00000474839 BAZ1AQ9NRL2 1556 aaPredicted RBP17.95■□□□□ 0.46
SKIV2L-208ENST00000474839 PRKCSHP14314 528 aaPredicted RBP17.89■□□□□ 0.45
SKIV2L-208ENST00000474839 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
SKIV2L-208ENST00000474839 RUSC2Q8N2Y8 1516 aa17.86■□□□□ 0.45
SKIV2L-208ENST00000474839 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
SKIV2L-208ENST00000474839 ITGAEP38570 1179 aa17.8■□□□□ 0.44
SKIV2L-208ENST00000474839 TNIKQ9UKE5 1360 aa17.78■□□□□ 0.44
SKIV2L-208ENST00000474839 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
SKIV2L-208ENST00000474839 BAZ1BQ9UIG0 1483 aaKnown RBP17.71■□□□□ 0.43
SKIV2L-208ENST00000474839 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
SKIV2L-208ENST00000474839 EIF4G1Q04637 1599 aaKnown RBP17.69■□□□□ 0.42
SKIV2L-208ENST00000474839 BCANQ96GW7 911 aa17.63■□□□□ 0.41
SKIV2L-208ENST00000474839 CLIP1P30622 1438 aa17.62■□□□□ 0.41
SKIV2L-208ENST00000474839 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
SKIV2L-208ENST00000474839 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
SKIV2L-208ENST00000474839 SMARCA2P51531 1590 aa17.55■□□□□ 0.4
SKIV2L-208ENST00000474839 BCL11AQ9H165 835 aa17.52■□□□□ 0.39
SKIV2L-208ENST00000474839 ATP1B4Q9UN42 357 aaPredicted RBP17.51■□□□□ 0.39
SKIV2L-208ENST00000474839 SUPT16HQ9Y5B9 1047 aaKnown RBP17.51■□□□□ 0.39
SKIV2L-208ENST00000474839 EEA1Q15075 1411 aa17.5■□□□□ 0.39
SKIV2L-208ENST00000474839 KANK4Q5T7N3 995 aaPredicted RBP17.49■□□□□ 0.39
SKIV2L-208ENST00000474839 KCNH8Q96L42 1107 aa17.49■□□□□ 0.39
SKIV2L-208ENST00000474839 CC2D2AQ9P2K1 1620 aa17.48■□□□□ 0.39
SKIV2L-208ENST00000474839 HIRIP3Q9BW71 556 aaPredicted RBP17.44■□□□□ 0.38
SKIV2L-208ENST00000474839 CEP164Q9UPV0 1460 aa17.43■□□□□ 0.38
SKIV2L-208ENST00000474839 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
SKIV2L-208ENST00000474839 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
SKIV2L-208ENST00000474839 NCAPD3P42695 1498 aa17.4■□□□□ 0.38
SKIV2L-208ENST00000474839 DDX10Q13206 875 aaKnown RBP17.38■□□□□ 0.37
SKIV2L-208ENST00000474839 FKBP8Q14318 412 aa17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 DHX57Q6P158 1386 aaKnown RBP17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 ERICH6Q7L0X2 663 aa17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 FAM50AQ14320 339 aaKnown RBP17.33■□□□□ 0.36
SKIV2L-208ENST00000474839 PEG3Q9GZU2 1588 aa17.33■□□□□ 0.36
SKIV2L-208ENST00000474839 NESP48681 1621 aa17.32■□□□□ 0.36
SKIV2L-208ENST00000474839 P3H3Q8IVL6 736 aa17.31■□□□□ 0.36
SKIV2L-208ENST00000474839 TSHZ2Q9NRE2 1034 aa17.31■□□□□ 0.36
SKIV2L-208ENST00000474839 TRIM52Q96A61 297 aa17.3■□□□□ 0.36
SKIV2L-208ENST00000474839 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
SKIV2L-208ENST00000474839 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
SKIV2L-208ENST00000474839 NEFLP07196 543 aa17.23■□□□□ 0.35
SKIV2L-208ENST00000474839 KIF21BO75037 1637 aa17.22■□□□□ 0.35
SKIV2L-208ENST00000474839 CADPSQ9ULU8 1353 aa17.2■□□□□ 0.34
SKIV2L-208ENST00000474839 HMGXB3Q12766 1538 aa17.19■□□□□ 0.34
SKIV2L-208ENST00000474839 CLSPNQ9HAW4 1339 aa17.16■□□□□ 0.34
SKIV2L-208ENST00000474839 ANP32EQ9BTT0 268 aa17.15■□□□□ 0.34
SKIV2L-208ENST00000474839 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
SKIV2L-208ENST00000474839 IRX6P78412 446 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms