RNA–Protein interactions for RNA: ENST00000472441.1

TM4SF1-202, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2 BASIC

Gene TM4SF1, Length 3,115 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-202ENST00000472441 NISCHQ9Y2I1 1504 aa10.45□□□□□ -0.74
TM4SF1-202ENST00000472441 CCDC180Q9P1Z9 1646 aa9.4□□□□□ -0.9
TM4SF1-202ENST00000472441 DCAF8L2P0C7V8 631 aa8.86□□□□□ -0.99
TM4SF1-202ENST00000472441 SHROOM4Q9ULL8 1493 aa8.86□□□□□ -0.99
TM4SF1-202ENST00000472441 MYO15BQ96JP2 1530 aa8.79□□□□□ -1
TM4SF1-202ENST00000472441 ZCCHC6Q5VYS8 1495 aaKnown RBP8.78□□□□□ -1
TM4SF1-202ENST00000472441 DCAF1Q9Y4B6 1507 aa8.76□□□□□ -1.01
TM4SF1-202ENST00000472441 NACADO15069 1562 aa8.68□□□□□ -1.02
TM4SF1-202ENST00000472441 ABCC9O60706 1549 aa8.63□□□□□ -1.03
TM4SF1-202ENST00000472441 RB1CC1Q8TDY2 1594 aa8.63□□□□□ -1.03
TM4SF1-202ENST00000472441 SUPT5HO00267 1087 aaKnown RBP8.62□□□□□ -1.03
TM4SF1-202ENST00000472441 AEBP2Q6ZN18 517 aaPredicted RBP8.58□□□□□ -1.04
TM4SF1-202ENST00000472441 UNC13AQ9UPW8 1703 aa8.53□□□□□ -1.04
TM4SF1-202ENST00000472441 SCRIBQ14160 1630 aa8.4□□□□□ -1.07
TM4SF1-202ENST00000472441 BICRAQ9NZM4 1560 aa8.37□□□□□ -1.07
TM4SF1-202ENST00000472441 POTEDQ86YR6 584 aa8.27□□□□□ -1.08
TM4SF1-202ENST00000472441 CHIC1Q5VXU3 224 aa8.24□□□□□ -1.09
TM4SF1-202ENST00000472441 RSF1Q96T23 1441 aaPredicted RBP8.21□□□□□ -1.1
TM4SF1-202ENST00000472441 CECR2Q9BXF3 1484 aa8.18□□□□□ -1.1
TM4SF1-202ENST00000472441 PABPN1Q86U42 306 aaKnown RBP eCLIP8.14□□□□□ -1.11
TM4SF1-202ENST00000472441 MROH2BQ7Z745 1585 aa8.12□□□□□ -1.11
TM4SF1-202ENST00000472441 EHMT2Q96KQ7 1210 aa8.11□□□□□ -1.11
TM4SF1-202ENST00000472441 PEG3Q9GZU2 1588 aa8.1□□□□□ -1.11
TM4SF1-202ENST00000472441 EIF4G1Q04637 1599 aaKnown RBP8.08□□□□□ -1.12
TM4SF1-202ENST00000472441 WIZO95785 1651 aa8.07□□□□□ -1.12
TM4SF1-202ENST00000472441 SMARCA4P51532 1647 aa8.06□□□□□ -1.12
TM4SF1-202ENST00000472441 BAZ1AQ9NRL2 1556 aaPredicted RBP8.04□□□□□ -1.12
TM4SF1-202ENST00000472441 TRIM41Q8WV44 630 aa8.03□□□□□ -1.12
TM4SF1-202ENST00000472441 SMARCA2P51531 1590 aa8.03□□□□□ -1.12
TM4SF1-202ENST00000472441 LOC105371045A0A1W2PR82 267 aa8.03□□□□□ -1.12
TM4SF1-202ENST00000472441 HMGXB3Q12766 1538 aa8.01□□□□□ -1.13
TM4SF1-202ENST00000472441 CC2D2AQ9P2K1 1620 aa8.01□□□□□ -1.13
TM4SF1-202ENST00000472441 FAM9AQ8IZU1 332 aaPredicted RBP7.98□□□□□ -1.13
TM4SF1-202ENST00000472441 NCAPD3P42695 1498 aa7.93□□□□□ -1.14
TM4SF1-202ENST00000472441 TOP2AP11388 1531 aaKnown RBP7.92□□□□□ -1.14
TM4SF1-202ENST00000472441 CCDC88BA6NC98 1476 aa7.91□□□□□ -1.14
TM4SF1-202ENST00000472441 ATAD2BQ9ULI0 1458 aa7.89□□□□□ -1.15
TM4SF1-202ENST00000472441 PRDM2Q13029 1718 aa7.89□□□□□ -1.15
TM4SF1-202ENST00000472441 ABCC8Q09428 1581 aa7.84□□□□□ -1.15
TM4SF1-202ENST00000472441 PCGF6Q9BYE7 350 aa7.83□□□□□ -1.16
TM4SF1-202ENST00000472441 BAZ1BQ9UIG0 1483 aaKnown RBP7.83□□□□□ -1.16
TM4SF1-202ENST00000472441 LAMC3Q9Y6N6 1575 aa7.77□□□□□ -1.17
TM4SF1-202ENST00000472441 PPARGC1BQ86YN6 1023 aaKnown RBP7.74□□□□□ -1.17
TM4SF1-202ENST00000472441 DNAJC5BQ9UF47 199 aa7.74□□□□□ -1.17
TM4SF1-202ENST00000472441 SOGA1O94964 1423 aa7.74□□□□□ -1.17
TM4SF1-202ENST00000472441 TTBK1Q5TCY1 1321 aaPredicted RBP7.73□□□□□ -1.17
TM4SF1-202ENST00000472441 WRNQ14191 1432 aaPredicted RBP eCLIP7.73□□□□□ -1.17
TM4SF1-202ENST00000472441 RUSC2Q8N2Y8 1516 aa7.71□□□□□ -1.18
TM4SF1-202ENST00000472441 RANGAP1P46060 587 aaPredicted RBP7.7□□□□□ -1.18
TM4SF1-202ENST00000472441 TRIM26Q12899 539 aaPredicted RBP7.7□□□□□ -1.18
TM4SF1-202ENST00000472441 CSRNP3Q8WYN3 585 aa7.7□□□□□ -1.18
TM4SF1-202ENST00000472441 UBTFP17480 764 aaKnown RBP7.69□□□□□ -1.18
TM4SF1-202ENST00000472441 SYNJ1O43426 1573 aa7.67□□□□□ -1.18
TM4SF1-202ENST00000472441 CFTRP13569 1480 aa7.66□□□□□ -1.18
TM4SF1-202ENST00000472441 THOC2Q8NI27 1593 aaKnown RBP7.66□□□□□ -1.18
TM4SF1-202ENST00000472441 HRCP23327 699 aa7.66□□□□□ -1.18
TM4SF1-202ENST00000472441 KIF21AQ7Z4S6 1674 aa7.65□□□□□ -1.18
TM4SF1-202ENST00000472441 EEA1Q15075 1411 aa7.64□□□□□ -1.19
TM4SF1-202ENST00000472441 WDR62O43379 1518 aa7.61□□□□□ -1.19
TM4SF1-202ENST00000472441 CEP162Q5TB80 1403 aa7.6□□□□□ -1.19
TM4SF1-202ENST00000472441 TNIKQ9UKE5 1360 aa7.6□□□□□ -1.19
TM4SF1-202ENST00000472441 WDR97A6NE52 1622 aa7.6□□□□□ -1.19
TM4SF1-202ENST00000472441 CADPSQ9ULU8 1353 aa7.6□□□□□ -1.19
TM4SF1-202ENST00000472441 GOLGA3Q08378 1498 aa7.59□□□□□ -1.19
TM4SF1-202ENST00000472441 TOP2BQ02880 1626 aa7.59□□□□□ -1.19
TM4SF1-202ENST00000472441 CUX2O14529 1486 aa7.58□□□□□ -1.2
TM4SF1-202ENST00000472441 BIVM-ERCC5R4GMW8 1640 aa7.57□□□□□ -1.2
TM4SF1-202ENST00000472441 CUX1P39880 1505 aa7.57□□□□□ -1.2
TM4SF1-202ENST00000472441 CEP164Q9UPV0 1460 aa7.56□□□□□ -1.2
TM4SF1-202ENST00000472441 PDS5BQ9NTI5 1447 aa7.56□□□□□ -1.2
TM4SF1-202ENST00000472441 MRC2Q9UBG0 1479 aa7.54□□□□□ -1.2
TM4SF1-202ENST00000472441 RAPGEF2Q9Y4G8 1499 aa7.54□□□□□ -1.2
TM4SF1-202ENST00000472441 DNMBPQ6XZF7 1577 aa7.54□□□□□ -1.2
TM4SF1-202ENST00000472441 NESP48681 1621 aa7.53□□□□□ -1.2
TM4SF1-202ENST00000472441 KIF21BO75037 1637 aa7.52□□□□□ -1.21
TM4SF1-202ENST00000472441 FANCD2Q9BXW9 1451 aa7.52□□□□□ -1.21
TM4SF1-202ENST00000472441 CLIP1P30622 1438 aa7.51□□□□□ -1.21
TM4SF1-202ENST00000472441 KIF27Q86VH2 1401 aa7.51□□□□□ -1.21
TM4SF1-202ENST00000472441 APLP2Q06481 763 aa7.49□□□□□ -1.21
TM4SF1-202ENST00000472441 URB2Q14146 1524 aaKnown RBP7.48□□□□□ -1.21
TM4SF1-202ENST00000472441 FGD5Q6ZNL6 1462 aa7.48□□□□□ -1.21
TM4SF1-202ENST00000472441 TARBP1Q13395 1621 aaKnown RBP7.47□□□□□ -1.21
TM4SF1-202ENST00000472441 PRXQ9BXM0 1461 aa7.47□□□□□ -1.21
TM4SF1-202ENST00000472441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.46□□□□□ -1.21
TM4SF1-202ENST00000472441 TOPBP1Q92547 1522 aa7.46□□□□□ -1.22
TM4SF1-202ENST00000472441 ERCC6Q03468 1493 aa7.46□□□□□ -1.22
TM4SF1-202ENST00000472441 IGF1RP08069 1367 aa7.45□□□□□ -1.22
TM4SF1-202ENST00000472441 ZEB1P37275 1124 aaPredicted RBP7.44□□□□□ -1.22
TM4SF1-202ENST00000472441 RAD54L2Q9Y4B4 1467 aa7.44□□□□□ -1.22
TM4SF1-202ENST00000472441 ERICH3Q5RHP9 1530 aa7.44□□□□□ -1.22
TM4SF1-202ENST00000472441 VPS8Q8N3P4 1428 aa7.44□□□□□ -1.22
TM4SF1-202ENST00000472441 CCER1Q8TC90 406 aaPredicted RBP7.43□□□□□ -1.22
TM4SF1-202ENST00000472441 CARMIL1Q5VZK9 1371 aa7.43□□□□□ -1.22
TM4SF1-202ENST00000472441 ABCA5Q8WWZ7 1642 aa7.43□□□□□ -1.22
TM4SF1-202ENST00000472441 IFT140Q96RY7 1462 aa7.42□□□□□ -1.22
TM4SF1-202ENST00000472441 HNRNPUL2Q1KMD3 747 aaKnown RBP7.41□□□□□ -1.22
TM4SF1-202ENST00000472441 PBRM1Q86U86 1689 aa7.41□□□□□ -1.22
TM4SF1-202ENST00000472441 POLA1P09884 1462 aaPredicted RBP7.41□□□□□ -1.22
TM4SF1-202ENST00000472441 P3H3Q8IVL6 736 aa7.4□□□□□ -1.22
TM4SF1-202ENST00000472441 TDRD9Q8NDG6 1382 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms