RNA–Protein interactions for RNA: ENST00000359526.8

DNMT1-202, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene DNMT1, Length 5,206 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-202ENST00000359526 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
DNMT1-202ENST00000359526 DCAF8L2P0C7V8 631 aa20.75■□□□□ 0.91
DNMT1-202ENST00000359526 SUPT5HO00267 1087 aaKnown RBP19.81■□□□□ 0.76
DNMT1-202ENST00000359526 SHROOM4Q9ULL8 1493 aa19.37■□□□□ 0.69
DNMT1-202ENST00000359526 FAM9AQ8IZU1 332 aaPredicted RBP19.31■□□□□ 0.68
DNMT1-202ENST00000359526 PELP1Q8IZL8 1130 aaKnown RBP19.3■□□□□ 0.68
DNMT1-202ENST00000359526 MYT1Q01538 1121 aa19.02■□□□□ 0.64
DNMT1-202ENST00000359526 APLP2Q06481 763 aa18.95■□□□□ 0.62
DNMT1-202ENST00000359526 EHMT2Q96KQ7 1210 aa18.89■□□□□ 0.61
DNMT1-202ENST00000359526 ZEB1P37275 1124 aaPredicted RBP18.8■□□□□ 0.6
DNMT1-202ENST00000359526 PCGF6Q9BYE7 350 aa18.76■□□□□ 0.59
DNMT1-202ENST00000359526 CCDC180Q9P1Z9 1646 aa18.71■□□□□ 0.59
DNMT1-202ENST00000359526 CENPBP07199 599 aaPredicted RBP18.66■□□□□ 0.58
DNMT1-202ENST00000359526 TRIM41Q8WV44 630 aa18.48■□□□□ 0.55
DNMT1-202ENST00000359526 ERICH6Q7L0X2 663 aa18.47■□□□□ 0.55
DNMT1-202ENST00000359526 ABCC9O60706 1549 aa18.47■□□□□ 0.55
DNMT1-202ENST00000359526 CCER1Q8TC90 406 aaPredicted RBP18.43■□□□□ 0.54
DNMT1-202ENST00000359526 TTBK1Q5TCY1 1321 aaPredicted RBP18.35■□□□□ 0.53
DNMT1-202ENST00000359526 UBTFP17480 764 aaKnown RBP18.17■□□□□ 0.5
DNMT1-202ENST00000359526 TRIM26Q12899 539 aaPredicted RBP18.16■□□□□ 0.5
DNMT1-202ENST00000359526 NEFLP07196 543 aa18.13■□□□□ 0.49
DNMT1-202ENST00000359526 RB1CC1Q8TDY2 1594 aa18.1■□□□□ 0.49
DNMT1-202ENST00000359526 HRCP23327 699 aa18.1■□□□□ 0.49
DNMT1-202ENST00000359526 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
DNMT1-202ENST00000359526 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
DNMT1-202ENST00000359526 RANGAP1P46060 587 aaPredicted RBP18.08■□□□□ 0.49
DNMT1-202ENST00000359526 NACADO15069 1562 aa18.01■□□□□ 0.47
DNMT1-202ENST00000359526 ATP1B4Q9UN42 357 aaPredicted RBP17.99■□□□□ 0.47
DNMT1-202ENST00000359526 PABPN1Q86U42 306 aaKnown RBP eCLIP17.84■□□□□ 0.45
DNMT1-202ENST00000359526 CHIC1Q5VXU3 224 aa17.83■□□□□ 0.45
DNMT1-202ENST00000359526 DCAF1Q9Y4B6 1507 aa17.82■□□□□ 0.44
DNMT1-202ENST00000359526 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
DNMT1-202ENST00000359526 PPARGC1BQ86YN6 1023 aaKnown RBP17.75■□□□□ 0.43
DNMT1-202ENST00000359526 LOC105371045A0A1W2PR82 267 aa17.66■□□□□ 0.42
DNMT1-202ENST00000359526 MYO15BQ96JP2 1530 aa17.56■□□□□ 0.4
DNMT1-202ENST00000359526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.55■□□□□ 0.4
DNMT1-202ENST00000359526 HNRNPUL2Q1KMD3 747 aaKnown RBP17.55■□□□□ 0.4
DNMT1-202ENST00000359526 DAXXQ9UER7 740 aaPredicted RBP17.53■□□□□ 0.4
DNMT1-202ENST00000359526 ITGAEP38570 1179 aa17.49■□□□□ 0.39
DNMT1-202ENST00000359526 DIEXFQ68CQ4 756 aaKnown RBP17.48■□□□□ 0.39
DNMT1-202ENST00000359526 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
DNMT1-202ENST00000359526 GTF3C3Q9Y5Q9 886 aa17.38■□□□□ 0.37
DNMT1-202ENST00000359526 RTL5Q5HYW3 569 aaPredicted RBP17.34■□□□□ 0.37
DNMT1-202ENST00000359526 POLR3GLQ9BT43 218 aa17.34■□□□□ 0.37
DNMT1-202ENST00000359526 BAZ1AQ9NRL2 1556 aaPredicted RBP17.31■□□□□ 0.36
DNMT1-202ENST00000359526 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
DNMT1-202ENST00000359526 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
DNMT1-202ENST00000359526 EEA1Q15075 1411 aa17.24■□□□□ 0.35
DNMT1-202ENST00000359526 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
DNMT1-202ENST00000359526 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
DNMT1-202ENST00000359526 FAM50AQ14320 339 aaKnown RBP17.15■□□□□ 0.34
DNMT1-202ENST00000359526 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
DNMT1-202ENST00000359526 ZNF316A6NFI3 1004 aaPredicted RBP17.13■□□□□ 0.33
DNMT1-202ENST00000359526 FBLN2P98095 1184 aa17.13■□□□□ 0.33
DNMT1-202ENST00000359526 NPM1P06748 294 aaKnown RBP eCLIP17.11■□□□□ 0.33
DNMT1-202ENST00000359526 ANP32CO43423 234 aa17.09■□□□□ 0.33
DNMT1-202ENST00000359526 BCANQ96GW7 911 aa17.09■□□□□ 0.33
DNMT1-202ENST00000359526 CNGB1Q14028 1251 aaPredicted RBP17.05■□□□□ 0.32
DNMT1-202ENST00000359526 CLSPNQ9HAW4 1339 aa17.05■□□□□ 0.32
DNMT1-202ENST00000359526 TRIM52Q96A61 297 aa17.05■□□□□ 0.32
DNMT1-202ENST00000359526 RSF1Q96T23 1441 aaPredicted RBP17.03■□□□□ 0.32
DNMT1-202ENST00000359526 NEUROD1Q13562 356 aa17.02■□□□□ 0.31
DNMT1-202ENST00000359526 ERCC6Q03468 1493 aa16.95■□□□□ 0.3
DNMT1-202ENST00000359526 SLC4A1APQ9BWU0 796 aaKnown RBP16.94■□□□□ 0.3
DNMT1-202ENST00000359526 KIF27Q86VH2 1401 aa16.9■□□□□ 0.3
DNMT1-202ENST00000359526 CHMP7Q8WUX9 453 aaPredicted RBP16.9■□□□□ 0.3
DNMT1-202ENST00000359526 PDS5BQ9NTI5 1447 aa16.89■□□□□ 0.29
DNMT1-202ENST00000359526 WRNQ14191 1432 aaPredicted RBP eCLIP16.88■□□□□ 0.29
DNMT1-202ENST00000359526 ESF1Q9H501 851 aaKnown RBP16.85■□□□□ 0.29
DNMT1-202ENST00000359526 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.28
DNMT1-202ENST00000359526 GOLGA3Q08378 1498 aa16.83■□□□□ 0.28
DNMT1-202ENST00000359526 CEP164Q9UPV0 1460 aa16.76■□□□□ 0.27
DNMT1-202ENST00000359526 EIF5BO60841 1220 aaKnown RBP16.76■□□□□ 0.27
DNMT1-202ENST00000359526 ZNF326Q5BKZ1 582 aaKnown RBP16.76■□□□□ 0.27
DNMT1-202ENST00000359526 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
DNMT1-202ENST00000359526 ANP32AP39687 249 aaKnown RBP16.74■□□□□ 0.27
DNMT1-202ENST00000359526 ZBTB47Q9UFB7 747 aaPredicted RBP16.74■□□□□ 0.27
DNMT1-202ENST00000359526 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
DNMT1-202ENST00000359526 CANXP27824 592 aaKnown RBP16.67■□□□□ 0.26
DNMT1-202ENST00000359526 MTUS2Q5JR59 1369 aa16.65■□□□□ 0.26
DNMT1-202ENST00000359526 CLIP1P30622 1438 aa16.65■□□□□ 0.26
DNMT1-202ENST00000359526 GLIPR1L2Q4G1C9 344 aa16.63■□□□□ 0.25
DNMT1-202ENST00000359526 TSPY4P0CV99 314 aa16.63■□□□□ 0.25
DNMT1-202ENST00000359526 TSPY10P0CW01 314 aa16.63■□□□□ 0.25
DNMT1-202ENST00000359526 TONSLQ96HA7 1378 aa16.63■□□□□ 0.25
DNMT1-202ENST00000359526 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
DNMT1-202ENST00000359526 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
DNMT1-202ENST00000359526 NEFMP07197 916 aa16.61■□□□□ 0.25
DNMT1-202ENST00000359526 PLEKHD1A6NEE1 506 aa16.61■□□□□ 0.25
DNMT1-202ENST00000359526 FKBP8Q14318 412 aa16.61■□□□□ 0.25
DNMT1-202ENST00000359526 TNIKQ9UKE5 1360 aa16.59■□□□□ 0.25
DNMT1-202ENST00000359526 SMARCA4P51532 1647 aa16.59■□□□□ 0.25
DNMT1-202ENST00000359526 ZNF777Q9ULD5 760 aaPredicted RBP16.58■□□□□ 0.24
DNMT1-202ENST00000359526 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
DNMT1-202ENST00000359526 CADPSQ9ULU8 1353 aa16.56■□□□□ 0.24
DNMT1-202ENST00000359526 CARMIL2Q6F5E8 1435 aa16.56■□□□□ 0.24
DNMT1-202ENST00000359526 MROH2BQ7Z745 1585 aa16.54■□□□□ 0.24
DNMT1-202ENST00000359526 NPM2Q86SE8 214 aaKnown RBP16.54■□□□□ 0.24
DNMT1-202ENST00000359526 ATAD2BQ9ULI0 1458 aa16.53■□□□□ 0.24
DNMT1-202ENST00000359526 CCDC88BA6NC98 1476 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms