RNA–Protein interactions for RNA: ENST00000470161.6

PCGF3-208, Transcript of polycomb group ring finger 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCGF3, Length 1,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF3-208ENST00000470161 NISCHQ9Y2I1 1504 aa46.5■■■■■ 5.03
PCGF3-208ENST00000470161 CCDC180Q9P1Z9 1646 aa41.25■■■■■ 4.19
PCGF3-208ENST00000470161 ABCC9O60706 1549 aa40.41■■■■■ 4.06
PCGF3-208ENST00000470161 DCAF8L2P0C7V8 631 aa39.07■■■■□ 3.85
PCGF3-208ENST00000470161 RB1CC1Q8TDY2 1594 aa38.88■■■■□ 3.81
PCGF3-208ENST00000470161 NACADO15069 1562 aa38.83■■■■□ 3.81
PCGF3-208ENST00000470161 ZCCHC6Q5VYS8 1495 aaKnown RBP38.72■■■■□ 3.79
PCGF3-208ENST00000470161 MYO15BQ96JP2 1530 aa38.57■■■■□ 3.77
PCGF3-208ENST00000470161 DCAF1Q9Y4B6 1507 aa38.44■■■■□ 3.74
PCGF3-208ENST00000470161 UNC13AQ9UPW8 1703 aa37.86■■■■□ 3.65
PCGF3-208ENST00000470161 PABPN1Q86U42 306 aaKnown RBP eCLIP37.82■■■■□ 3.65
PCGF3-208ENST00000470161 SCRIBQ14160 1630 aa37.72■■■■□ 3.63
PCGF3-208ENST00000470161 BICRAQ9NZM4 1560 aa37.6■■■■□ 3.61
PCGF3-208ENST00000470161 SHROOM4Q9ULL8 1493 aa37.26■■■■□ 3.56
PCGF3-208ENST00000470161 DNAJC5BQ9UF47 199 aa36.99■■■■□ 3.51
PCGF3-208ENST00000470161 EIF4G1Q04637 1599 aaKnown RBP36.66■■■■□ 3.46
PCGF3-208ENST00000470161 CC2D2AQ9P2K1 1620 aa36.5■■■■□ 3.43
PCGF3-208ENST00000470161 CECR2Q9BXF3 1484 aa36.29■■■■□ 3.4
PCGF3-208ENST00000470161 BAZ1AQ9NRL2 1556 aaPredicted RBP36.06■■■■□ 3.36
PCGF3-208ENST00000470161 SMARCA4P51532 1647 aa36.05■■■■□ 3.36
PCGF3-208ENST00000470161 ATAD2BQ9ULI0 1458 aa35.86■■■■□ 3.33
PCGF3-208ENST00000470161 SMARCA2P51531 1590 aa35.84■■■■□ 3.33
PCGF3-208ENST00000470161 NCAPD3P42695 1498 aa35.83■■■■□ 3.33
PCGF3-208ENST00000470161 MROH2BQ7Z745 1585 aa35.83■■■■□ 3.33
PCGF3-208ENST00000470161 PEG3Q9GZU2 1588 aa35.66■■■■□ 3.3
PCGF3-208ENST00000470161 HMGXB3Q12766 1538 aa35.63■■■■□ 3.29
PCGF3-208ENST00000470161 BAZ1BQ9UIG0 1483 aaKnown RBP35.62■■■■□ 3.29
PCGF3-208ENST00000470161 RSF1Q96T23 1441 aaPredicted RBP35.47■■■■□ 3.27
PCGF3-208ENST00000470161 WIZO95785 1651 aa35.44■■■■□ 3.26
PCGF3-208ENST00000470161 TOP2AP11388 1531 aaKnown RBP35.07■■■■□ 3.21
PCGF3-208ENST00000470161 NESP48681 1621 aa34.94■■■■□ 3.18
PCGF3-208ENST00000470161 ERCC6Q03468 1493 aa34.89■■■■□ 3.18
PCGF3-208ENST00000470161 LAMC3Q9Y6N6 1575 aa34.88■■■■□ 3.17
PCGF3-208ENST00000470161 CADPSQ9ULU8 1353 aa34.84■■■■□ 3.17
PCGF3-208ENST00000470161 SUPT5HO00267 1087 aaKnown RBP34.8■■■■□ 3.16
PCGF3-208ENST00000470161 PDS5BQ9NTI5 1447 aa34.71■■■■□ 3.15
PCGF3-208ENST00000470161 CCDC88BA6NC98 1476 aa34.7■■■■□ 3.14
PCGF3-208ENST00000470161 CFTRP13569 1480 aa34.6■■■■□ 3.13
PCGF3-208ENST00000470161 KIF21AQ7Z4S6 1674 aa34.5■■■■□ 3.11
PCGF3-208ENST00000470161 FANCD2Q9BXW9 1451 aa34.43■■■■□ 3.1
PCGF3-208ENST00000470161 CUX2O14529 1486 aa34.4■■■■□ 3.1
PCGF3-208ENST00000470161 CEP164Q9UPV0 1460 aa34.39■■■■□ 3.1
PCGF3-208ENST00000470161 THOC2Q8NI27 1593 aaKnown RBP34.34■■■■□ 3.09
PCGF3-208ENST00000470161 MRC2Q9UBG0 1479 aa34.29■■■■□ 3.08
PCGF3-208ENST00000470161 PRDM2Q13029 1718 aa34.26■■■■□ 3.08
PCGF3-208ENST00000470161 WDR62O43379 1518 aa34.13■■■■□ 3.05
PCGF3-208ENST00000470161 URB2Q14146 1524 aaKnown RBP34.03■■■■□ 3.04
PCGF3-208ENST00000470161 ABCC8Q09428 1581 aa33.91■■■■□ 3.02
PCGF3-208ENST00000470161 TOPBP1Q92547 1522 aa33.86■■■■□ 3.01
PCGF3-208ENST00000470161 DNMBPQ6XZF7 1577 aa33.81■■■■□ 3
PCGF3-208ENST00000470161 IFT140Q96RY7 1462 aa33.65■■■□□ 2.98
PCGF3-208ENST00000470161 CUX1P39880 1505 aa33.61■■■□□ 2.97
PCGF3-208ENST00000470161 POLA1P09884 1462 aaPredicted RBP33.58■■■□□ 2.97
PCGF3-208ENST00000470161 FGD5Q6ZNL6 1462 aa33.52■■■□□ 2.96
PCGF3-208ENST00000470161 SOGA1O94964 1423 aa33.5■■■□□ 2.95
PCGF3-208ENST00000470161 WRNQ14191 1432 aaPredicted RBP eCLIP33.49■■■□□ 2.956e-6■■■■■ 35.2
PCGF3-208ENST00000470161 ZNF608Q9ULD9 1512 aaPredicted RBP33.46■■■□□ 2.95
PCGF3-208ENST00000470161 RAD54L2Q9Y4B4 1467 aa33.45■■■□□ 2.95
PCGF3-208ENST00000470161 TARBP1Q13395 1621 aaKnown RBP33.43■■■□□ 2.94
PCGF3-208ENST00000470161 TOP2BQ02880 1626 aa33.34■■■□□ 2.93
PCGF3-208ENST00000470161 AQRO60306 1485 aaKnown RBP eCLIP33.33■■■□□ 2.933e-10■■■■■ 32.7
PCGF3-208ENST00000470161 SYNJ1O43426 1573 aa33.32■■■□□ 2.92
PCGF3-208ENST00000470161 EIF4G3O43432 1585 aaKnown RBP33.31■■■□□ 2.92
PCGF3-208ENST00000470161 DNAJC5Q9H3Z4 198 aa33.31■■■□□ 2.92
PCGF3-208ENST00000470161 TDRD9Q8NDG6 1382 aaKnown RBP33.31■■■□□ 2.92
PCGF3-208ENST00000470161 BIVM-ERCC5R4GMW8 1640 aa33.31■■■□□ 2.92
PCGF3-208ENST00000470161 WDR97A6NE52 1622 aa33.19■■■□□ 2.9
PCGF3-208ENST00000470161 ABCA10Q8WWZ4 1543 aa33.18■■■□□ 2.9
PCGF3-208ENST00000470161 OSCARQ8IYS5 282 aa33.1■■■□□ 2.89
PCGF3-208ENST00000470161 GAPVD1Q14C86 1478 aa33.1■■■□□ 2.89
PCGF3-208ENST00000470161 GRIN2BQ13224 1484 aa33.08■■■□□ 2.89
PCGF3-208ENST00000470161 FBLN2P98095 1184 aa33.07■■■□□ 2.88
PCGF3-208ENST00000470161 SNAPC4Q5SXM2 1469 aa33■■■□□ 2.87
PCGF3-208ENST00000470161 ABCA5Q8WWZ7 1642 aa32.99■■■□□ 2.87
PCGF3-208ENST00000470161 MAGI1Q96QZ7 1491 aaPredicted RBP32.96■■■□□ 2.87
PCGF3-208ENST00000470161 CHMP7Q8WUX9 453 aaPredicted RBP32.94■■■□□ 2.86
PCGF3-208ENST00000470161 PBRM1Q86U86 1689 aa32.93■■■□□ 2.86
PCGF3-208ENST00000470161 TRIM41Q8WV44 630 aa32.88■■■□□ 2.85
PCGF3-208ENST00000470161 CHD1O14646 1710 aa32.86■■■□□ 2.85
PCGF3-208ENST00000470161 SYNJ2O15056 1496 aa32.84■■■□□ 2.85
PCGF3-208ENST00000470161 KIF27Q86VH2 1401 aa32.81■■■□□ 2.84
PCGF3-208ENST00000470161 ERICH3Q5RHP9 1530 aa32.79■■■□□ 2.84
PCGF3-208ENST00000470161 FHAD1B1AJZ9 1412 aa32.71■■■□□ 2.83
PCGF3-208ENST00000470161 ADAMTS12P58397 1594 aa32.68■■■□□ 2.82
PCGF3-208ENST00000470161 IGF1RP08069 1367 aa32.63■■■□□ 2.81
PCGF3-208ENST00000470161 GRIN2AQ12879 1464 aa32.63■■■□□ 2.81
PCGF3-208ENST00000470161 CUL7Q14999 1698 aa32.5■■■□□ 2.79
PCGF3-208ENST00000470161 CLASP1Q7Z460 1538 aa32.5■■■□□ 2.79
PCGF3-208ENST00000470161 CARMIL1Q5VZK9 1371 aa32.48■■■□□ 2.79
PCGF3-208ENST00000470161 RUSC2Q8N2Y8 1516 aa32.46■■■□□ 2.79
PCGF3-208ENST00000470161 ARHGEF11O15085 1522 aa32.46■■■□□ 2.79
PCGF3-208ENST00000470161 NUP160Q12769 1436 aa32.45■■■□□ 2.79
PCGF3-208ENST00000470161 CHIC1Q5VXU3 224 aa32.43■■■□□ 2.78
PCGF3-208ENST00000470161 RIMBP3CA6NJZ7 1639 aa32.42■■■□□ 2.78
PCGF3-208ENST00000470161 RIMBP3BA6NNM3 1639 aa32.42■■■□□ 2.78
PCGF3-208ENST00000470161 RIMBP3Q9UFD9 1639 aa32.42■■■□□ 2.78
PCGF3-208ENST00000470161 CEP170Q5SW79 1584 aa32.42■■■□□ 2.78
PCGF3-208ENST00000470161 CYB5RLQ6IPT4 315 aa32.28■■■□□ 2.76
PCGF3-208ENST00000470161 RAPGEF2Q9Y4G8 1499 aa32.27■■■□□ 2.76
PCGF3-208ENST00000470161 JPH4Q96JJ6 628 aa32.24■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms