RNA–Protein interactions for RNA: ENST00000619300.4

PSPC1-206, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PSPC1, Length 2,013 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-206ENST00000619300 NISCHQ9Y2I1 1504 aa42.06■■■■■ 4.32
PSPC1-206ENST00000619300 CCDC180Q9P1Z9 1646 aa36.35■■■■□ 3.41
PSPC1-206ENST00000619300 ZCCHC6Q5VYS8 1495 aaKnown RBP35.39■■■■□ 3.26
PSPC1-206ENST00000619300 DCAF8L2P0C7V8 631 aa34.8■■■■□ 3.16
PSPC1-206ENST00000619300 SHROOM4Q9ULL8 1493 aa34.73■■■■□ 3.15
PSPC1-206ENST00000619300 DCAF1Q9Y4B6 1507 aa34.72■■■■□ 3.15
PSPC1-206ENST00000619300 ABCC9O60706 1549 aa34.18■■■■□ 3.06
PSPC1-206ENST00000619300 MYO15BQ96JP2 1530 aa34.15■■■■□ 3.06
PSPC1-206ENST00000619300 NACADO15069 1562 aa33.84■■■■□ 3.01
PSPC1-206ENST00000619300 SUPT5HO00267 1087 aaKnown RBP33.67■■■□□ 2.98
PSPC1-206ENST00000619300 SCRIBQ14160 1630 aa33.6■■■□□ 2.97
PSPC1-206ENST00000619300 RB1CC1Q8TDY2 1594 aa33.44■■■□□ 2.94
PSPC1-206ENST00000619300 RSF1Q96T23 1441 aaPredicted RBP32.85■■■□□ 2.85
PSPC1-206ENST00000619300 UNC13AQ9UPW8 1703 aa32.72■■■□□ 2.83
PSPC1-206ENST00000619300 CECR2Q9BXF3 1484 aa32.71■■■□□ 2.83
PSPC1-206ENST00000619300 MROH2BQ7Z745 1585 aa32.54■■■□□ 2.8
PSPC1-206ENST00000619300 BICRAQ9NZM4 1560 aa32.45■■■□□ 2.79
PSPC1-206ENST00000619300 CHIC1Q5VXU3 224 aa32.43■■■□□ 2.78
PSPC1-206ENST00000619300 PABPN1Q86U42 306 aaKnown RBP eCLIP32.42■■■□□ 2.78
PSPC1-206ENST00000619300 BAZ1AQ9NRL2 1556 aaPredicted RBP32.42■■■□□ 2.78
PSPC1-206ENST00000619300 WIZO95785 1651 aa32.26■■■□□ 2.75
PSPC1-206ENST00000619300 SMARCA4P51532 1647 aa32.21■■■□□ 2.75
PSPC1-206ENST00000619300 TOP2AP11388 1531 aaKnown RBP31.91■■■□□ 2.7
PSPC1-206ENST00000619300 PEG3Q9GZU2 1588 aa31.77■■■□□ 2.68
PSPC1-206ENST00000619300 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
PSPC1-206ENST00000619300 ATAD2BQ9ULI0 1458 aa31.64■■■□□ 2.66
PSPC1-206ENST00000619300 SMARCA2P51531 1590 aa31.64■■■□□ 2.66
PSPC1-206ENST00000619300 TRIM41Q8WV44 630 aa31.6■■■□□ 2.65
PSPC1-206ENST00000619300 EIF4G1Q04637 1599 aaKnown RBP31.5■■■□□ 2.63
PSPC1-206ENST00000619300 BAZ1BQ9UIG0 1483 aaKnown RBP31.47■■■□□ 2.63
PSPC1-206ENST00000619300 NCAPD3P42695 1498 aa31.29■■■□□ 2.6
PSPC1-206ENST00000619300 LOC105371045A0A1W2PR82 267 aa31.26■■■□□ 2.59
PSPC1-206ENST00000619300 HMGXB3Q12766 1538 aa31.21■■■□□ 2.59
PSPC1-206ENST00000619300 ABCC8Q09428 1581 aa31.12■■■□□ 2.57
PSPC1-206ENST00000619300 FAM9AQ8IZU1 332 aaPredicted RBP31.07■■■□□ 2.56
PSPC1-206ENST00000619300 WRNQ14191 1432 aaPredicted RBP eCLIP30.89■■■□□ 2.541e-6■■■■■ 58.5
PSPC1-206ENST00000619300 CC2D2AQ9P2K1 1620 aa30.88■■■□□ 2.53
PSPC1-206ENST00000619300 CFTRP13569 1480 aa30.71■■■□□ 2.51
PSPC1-206ENST00000619300 SYNJ1O43426 1573 aa30.69■■■□□ 2.5
PSPC1-206ENST00000619300 SOGA1O94964 1423 aa30.69■■■□□ 2.5
PSPC1-206ENST00000619300 EHMT2Q96KQ7 1210 aa30.65■■■□□ 2.5
PSPC1-206ENST00000619300 EEA1Q15075 1411 aa30.64■■■□□ 2.49
PSPC1-206ENST00000619300 CADPSQ9ULU8 1353 aa30.55■■■□□ 2.48
PSPC1-206ENST00000619300 RUSC2Q8N2Y8 1516 aa30.54■■■□□ 2.48
PSPC1-206ENST00000619300 CSRNP3Q8WYN3 585 aa30.54■■■□□ 2.48
PSPC1-206ENST00000619300 TOP2BQ02880 1626 aa30.52■■■□□ 2.48
PSPC1-206ENST00000619300 BIVM-ERCC5R4GMW8 1640 aa30.44■■■□□ 2.46
PSPC1-206ENST00000619300 PRDM2Q13029 1718 aa30.39■■■□□ 2.46
PSPC1-206ENST00000619300 CUX1P39880 1505 aa30.38■■■□□ 2.45
PSPC1-206ENST00000619300 TNIKQ9UKE5 1360 aa30.27■■■□□ 2.44
PSPC1-206ENST00000619300 PCGF6Q9BYE7 350 aa30.25■■■□□ 2.43
PSPC1-206ENST00000619300 GOLGA3Q08378 1498 aa30.24■■■□□ 2.43
PSPC1-206ENST00000619300 UBTFP17480 764 aaKnown RBP30.2■■■□□ 2.43
PSPC1-206ENST00000619300 CEP164Q9UPV0 1460 aa30.2■■■□□ 2.43
PSPC1-206ENST00000619300 FANCD2Q9BXW9 1451 aa30.18■■■□□ 2.42
PSPC1-206ENST00000619300 KIF21BO75037 1637 aa30.16■■■□□ 2.42
PSPC1-206ENST00000619300 DNAJC5BQ9UF47 199 aa30.15■■■□□ 2.42
PSPC1-206ENST00000619300 NESP48681 1621 aa30.14■■■□□ 2.42
PSPC1-206ENST00000619300 CEP162Q5TB80 1403 aa30.12■■■□□ 2.41
PSPC1-206ENST00000619300 TRIM26Q12899 539 aaPredicted RBP30.12■■■□□ 2.41
PSPC1-206ENST00000619300 LAMC3Q9Y6N6 1575 aa30.09■■■□□ 2.41
PSPC1-206ENST00000619300 KIF27Q86VH2 1401 aa30.08■■■□□ 2.41
PSPC1-206ENST00000619300 RAPGEF2Q9Y4G8 1499 aa30.01■■■□□ 2.39
PSPC1-206ENST00000619300 FGD5Q6ZNL6 1462 aa29.99■■■□□ 2.39
PSPC1-206ENST00000619300 PRXQ9BXM0 1461 aa29.97■■■□□ 2.39
PSPC1-206ENST00000619300 DNMBPQ6XZF7 1577 aa29.93■■■□□ 2.38
PSPC1-206ENST00000619300 PDS5BQ9NTI5 1447 aa29.93■■■□□ 2.38
PSPC1-206ENST00000619300 CUX2O14529 1486 aa29.9■■■□□ 2.38
PSPC1-206ENST00000619300 ERICH3Q5RHP9 1530 aa29.9■■■□□ 2.38
PSPC1-206ENST00000619300 TOPBP1Q92547 1522 aa29.89■■■□□ 2.38
PSPC1-206ENST00000619300 IGF1RP08069 1367 aa29.82■■■□□ 2.36
PSPC1-206ENST00000619300 CLIP1P30622 1438 aa29.81■■■□□ 2.36
PSPC1-206ENST00000619300 POLA1P09884 1462 aaPredicted RBP29.79■■■□□ 2.36
PSPC1-206ENST00000619300 URB2Q14146 1524 aaKnown RBP29.78■■■□□ 2.36
PSPC1-206ENST00000619300 PPARGC1BQ86YN6 1023 aaKnown RBP29.76■■■□□ 2.36
PSPC1-206ENST00000619300 RAD54L2Q9Y4B4 1467 aa29.74■■■□□ 2.35
PSPC1-206ENST00000619300 ABCA10Q8WWZ4 1543 aa29.72■■■□□ 2.35
PSPC1-206ENST00000619300 HRCP23327 699 aa29.69■■■□□ 2.34
PSPC1-206ENST00000619300 KIF21AQ7Z4S6 1674 aa29.67■■■□□ 2.34
PSPC1-206ENST00000619300 CARMIL1Q5VZK9 1371 aa29.66■■■□□ 2.34
PSPC1-206ENST00000619300 RANGAP1P46060 587 aaPredicted RBP29.62■■■□□ 2.33
PSPC1-206ENST00000619300 VPS8Q8N3P4 1428 aa29.59■■■□□ 2.33
PSPC1-206ENST00000619300 WDR97A6NE52 1622 aa29.48■■■□□ 2.31
PSPC1-206ENST00000619300 MRC2Q9UBG0 1479 aa29.48■■■□□ 2.31
PSPC1-206ENST00000619300 TDRD9Q8NDG6 1382 aaKnown RBP29.45■■■□□ 2.3
PSPC1-206ENST00000619300 ARAP1Q96P48 1450 aa29.43■■■□□ 2.3
PSPC1-206ENST00000619300 TTBK1Q5TCY1 1321 aaPredicted RBP29.42■■■□□ 2.3
PSPC1-206ENST00000619300 GAPVD1Q14C86 1478 aa29.4■■■□□ 2.3
PSPC1-206ENST00000619300 APLP2Q06481 763 aa29.39■■■□□ 2.3
PSPC1-206ENST00000619300 ABCA5Q8WWZ7 1642 aa29.39■■■□□ 2.3
PSPC1-206ENST00000619300 CUL7Q14999 1698 aa29.39■■■□□ 2.3
PSPC1-206ENST00000619300 TARBP1Q13395 1621 aaKnown RBP29.37■■■□□ 2.29
PSPC1-206ENST00000619300 ARHGAP35Q9NRY4 1499 aa29.37■■■□□ 2.29
PSPC1-206ENST00000619300 WDR62O43379 1518 aa29.28■■■□□ 2.28
PSPC1-206ENST00000619300 ERCC6Q03468 1493 aa29.25■■■□□ 2.27
PSPC1-206ENST00000619300 IFT140Q96RY7 1462 aa29.19■■■□□ 2.26
PSPC1-206ENST00000619300 AQRO60306 1485 aaKnown RBP eCLIP29.17■■■□□ 2.262e-11■■□□□ 13.8
PSPC1-206ENST00000619300 ZEB1P37275 1124 aaPredicted RBP29.11■■■□□ 2.25
PSPC1-206ENST00000619300 CTTNBP2Q8WZ74 1663 aa29.09■■■□□ 2.25
PSPC1-206ENST00000619300 GRIN2BQ13224 1484 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms