RNA–Protein interactions for RNA: ENST00000492741.5

PSPC1-204, Transcript of paraspeckle component 1, humanhuman

TSL 2

Gene PSPC1, Length 1,709 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-204ENST00000492741 NISCHQ9Y2I1 1504 aa51.15■■■■■ 5.78
PSPC1-204ENST00000492741 CCDC180Q9P1Z9 1646 aa44.89■■■■■ 4.78
PSPC1-204ENST00000492741 ABCC9O60706 1549 aa43.12■■■■■ 4.49
PSPC1-204ENST00000492741 ZCCHC6Q5VYS8 1495 aaKnown RBP42.81■■■■■ 4.44
PSPC1-204ENST00000492741 DCAF8L2P0C7V8 631 aa42.66■■■■■ 4.42
PSPC1-204ENST00000492741 DCAF1Q9Y4B6 1507 aa42.27■■■■■ 4.36
PSPC1-204ENST00000492741 MYO15BQ96JP2 1530 aa42.03■■■■■ 4.32
PSPC1-204ENST00000492741 NACADO15069 1562 aa42.02■■■■■ 4.32
PSPC1-204ENST00000492741 RB1CC1Q8TDY2 1594 aa41.83■■■■■ 4.29
PSPC1-204ENST00000492741 SHROOM4Q9ULL8 1493 aa41.33■■■■■ 4.21
PSPC1-204ENST00000492741 SCRIBQ14160 1630 aa41.22■■■■■ 4.19
PSPC1-204ENST00000492741 UNC13AQ9UPW8 1703 aa40.85■■■■■ 4.13
PSPC1-204ENST00000492741 PABPN1Q86U42 306 aaKnown RBP eCLIP40.57■■■■■ 4.09
PSPC1-204ENST00000492741 BICRAQ9NZM4 1560 aa40.48■■■■■ 4.07
PSPC1-204ENST00000492741 CECR2Q9BXF3 1484 aa39.79■■■■□ 3.96
PSPC1-204ENST00000492741 BAZ1AQ9NRL2 1556 aaPredicted RBP39.57■■■■□ 3.93
PSPC1-204ENST00000492741 SUPT5HO00267 1087 aaKnown RBP39.48■■■■□ 3.91
PSPC1-204ENST00000492741 MROH2BQ7Z745 1585 aa39.48■■■■□ 3.91
PSPC1-204ENST00000492741 SMARCA4P51532 1647 aa39.45■■■■□ 3.91
PSPC1-204ENST00000492741 RSF1Q96T23 1441 aaPredicted RBP39.43■■■■□ 3.9
PSPC1-204ENST00000492741 EIF4G1Q04637 1599 aaKnown RBP39.38■■■■□ 3.89
PSPC1-204ENST00000492741 WIZO95785 1651 aa39.11■■■■□ 3.85
PSPC1-204ENST00000492741 ATAD2BQ9ULI0 1458 aa38.99■■■■□ 3.83
PSPC1-204ENST00000492741 SMARCA2P51531 1590 aa38.98■■■■□ 3.83
PSPC1-204ENST00000492741 CC2D2AQ9P2K1 1620 aa38.97■■■■□ 3.83
PSPC1-204ENST00000492741 PEG3Q9GZU2 1588 aa38.96■■■■□ 3.83
PSPC1-204ENST00000492741 BAZ1BQ9UIG0 1483 aaKnown RBP38.78■■■■□ 3.8
PSPC1-204ENST00000492741 NCAPD3P42695 1498 aa38.77■■■■□ 3.8
PSPC1-204ENST00000492741 TOP2AP11388 1531 aaKnown RBP38.71■■■■□ 3.79
PSPC1-204ENST00000492741 HMGXB3Q12766 1538 aa38.65■■■■□ 3.78
PSPC1-204ENST00000492741 DNAJC5BQ9UF47 199 aa38.6■■■■□ 3.77
PSPC1-204ENST00000492741 CCDC88BA6NC98 1476 aa38.32■■■■□ 3.73
PSPC1-204ENST00000492741 CADPSQ9ULU8 1353 aa37.78■■■■□ 3.64
PSPC1-204ENST00000492741 CFTRP13569 1480 aa37.73■■■■□ 3.63
PSPC1-204ENST00000492741 NESP48681 1621 aa37.6■■■■□ 3.61
PSPC1-204ENST00000492741 LAMC3Q9Y6N6 1575 aa37.58■■■■□ 3.61
PSPC1-204ENST00000492741 PRDM2Q13029 1718 aa37.43■■■■□ 3.58
PSPC1-204ENST00000492741 CHIC1Q5VXU3 224 aa37.38■■■■□ 3.57
PSPC1-204ENST00000492741 PDS5BQ9NTI5 1447 aa37.37■■■■□ 3.57
PSPC1-204ENST00000492741 FANCD2Q9BXW9 1451 aa37.34■■■■□ 3.57
PSPC1-204ENST00000492741 ABCC8Q09428 1581 aa37.28■■■■□ 3.56
PSPC1-204ENST00000492741 TRIM41Q8WV44 630 aa37.19■■■■□ 3.54
PSPC1-204ENST00000492741 CEP164Q9UPV0 1460 aa37.18■■■■□ 3.54
PSPC1-204ENST00000492741 WRNQ14191 1432 aaPredicted RBP eCLIP37.17■■■■□ 3.541e-6■■■■■ 58.5
PSPC1-204ENST00000492741 KIF21AQ7Z4S6 1674 aa37.12■■■■□ 3.53
PSPC1-204ENST00000492741 ERCC6Q03468 1493 aa37.1■■■■□ 3.53
PSPC1-204ENST00000492741 SYNJ1O43426 1573 aa36.97■■■■□ 3.51
PSPC1-204ENST00000492741 CUX1P39880 1505 aa36.95■■■■□ 3.51
PSPC1-204ENST00000492741 TOP2BQ02880 1626 aa36.9■■■■□ 3.5
PSPC1-204ENST00000492741 MRC2Q9UBG0 1479 aa36.88■■■■□ 3.49
PSPC1-204ENST00000492741 URB2Q14146 1524 aaKnown RBP36.87■■■■□ 3.49
PSPC1-204ENST00000492741 DNMBPQ6XZF7 1577 aa36.86■■■■□ 3.49
PSPC1-204ENST00000492741 BIVM-ERCC5R4GMW8 1640 aa36.85■■■■□ 3.49
PSPC1-204ENST00000492741 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
PSPC1-204ENST00000492741 FGD5Q6ZNL6 1462 aa36.69■■■■□ 3.46
PSPC1-204ENST00000492741 THOC2Q8NI27 1593 aaKnown RBP36.68■■■■□ 3.46
PSPC1-204ENST00000492741 WDR62O43379 1518 aa36.66■■■■□ 3.46
PSPC1-204ENST00000492741 POLA1P09884 1462 aaPredicted RBP36.6■■■■□ 3.45
PSPC1-204ENST00000492741 SOGA1O94964 1423 aa36.54■■■■□ 3.44
PSPC1-204ENST00000492741 RAD54L2Q9Y4B4 1467 aa36.49■■■■□ 3.43
PSPC1-204ENST00000492741 FAM9AQ8IZU1 332 aaPredicted RBP36.48■■■■□ 3.43
PSPC1-204ENST00000492741 CUX2O14529 1486 aa36.39■■■■□ 3.42
PSPC1-204ENST00000492741 ABCA10Q8WWZ4 1543 aa36.34■■■■□ 3.41
PSPC1-204ENST00000492741 RUSC2Q8N2Y8 1516 aa36.34■■■■□ 3.41
PSPC1-204ENST00000492741 IFT140Q96RY7 1462 aa36.33■■■■□ 3.41
PSPC1-204ENST00000492741 KIF27Q86VH2 1401 aa36.32■■■■□ 3.4
PSPC1-204ENST00000492741 EEA1Q15075 1411 aa36.3■■■■□ 3.4
PSPC1-204ENST00000492741 TARBP1Q13395 1621 aaKnown RBP36.3■■■■□ 3.4
PSPC1-204ENST00000492741 TDRD9Q8NDG6 1382 aaKnown RBP36.24■■■■□ 3.39
PSPC1-204ENST00000492741 WDR97A6NE52 1622 aa36.21■■■■□ 3.39
PSPC1-204ENST00000492741 CSRNP3Q8WYN3 585 aa36.21■■■■□ 3.39
PSPC1-204ENST00000492741 ZNF608Q9ULD9 1512 aaPredicted RBP36.11■■■■□ 3.37
PSPC1-204ENST00000492741 GAPVD1Q14C86 1478 aa36.1■■■■□ 3.37
PSPC1-204ENST00000492741 AQRO60306 1485 aaKnown RBP eCLIP36.1■■■■□ 3.372e-11■■□□□ 13.8
PSPC1-204ENST00000492741 ABCA5Q8WWZ7 1642 aa36.06■■■■□ 3.36
PSPC1-204ENST00000492741 IGF1RP08069 1367 aa36.04■■■■□ 3.36
PSPC1-204ENST00000492741 EHMT2Q96KQ7 1210 aa36.02■■■■□ 3.36
PSPC1-204ENST00000492741 EIF4G3O43432 1585 aaKnown RBP35.97■■■■□ 3.35
PSPC1-204ENST00000492741 LOC105371045A0A1W2PR82 267 aa35.94■■■■□ 3.34
PSPC1-204ENST00000492741 GRIN2BQ13224 1484 aa35.93■■■■□ 3.34
PSPC1-204ENST00000492741 ERICH3Q5RHP9 1530 aa35.92■■■■□ 3.34
PSPC1-204ENST00000492741 PBRM1Q86U86 1689 aa35.88■■■■□ 3.33
PSPC1-204ENST00000492741 CARMIL1Q5VZK9 1371 aa35.88■■■■□ 3.33
PSPC1-204ENST00000492741 PRXQ9BXM0 1461 aa35.83■■■■□ 3.33
PSPC1-204ENST00000492741 KIF21BO75037 1637 aa35.8■■■■□ 3.32
PSPC1-204ENST00000492741 CUL7Q14999 1698 aa35.79■■■■□ 3.32
PSPC1-204ENST00000492741 GOLGA3Q08378 1498 aa35.76■■■■□ 3.32
PSPC1-204ENST00000492741 SNAPC4Q5SXM2 1469 aa35.75■■■■□ 3.31
PSPC1-204ENST00000492741 RAPGEF2Q9Y4G8 1499 aa35.75■■■■□ 3.31
PSPC1-204ENST00000492741 UBTFP17480 764 aaKnown RBP35.75■■■■□ 3.31
PSPC1-204ENST00000492741 FHAD1B1AJZ9 1412 aa35.71■■■■□ 3.31
PSPC1-204ENST00000492741 MAGI1Q96QZ7 1491 aaPredicted RBP35.69■■■■□ 3.3
PSPC1-204ENST00000492741 ADAMTS12P58397 1594 aa35.66■■■■□ 3.3
PSPC1-204ENST00000492741 FBLN2P98095 1184 aa35.62■■■■□ 3.29
PSPC1-204ENST00000492741 CHMP7Q8WUX9 453 aaPredicted RBP35.61■■■■□ 3.29
PSPC1-204ENST00000492741 SYNJ2O15056 1496 aa35.56■■■■□ 3.28
PSPC1-204ENST00000492741 TNIKQ9UKE5 1360 aa35.52■■■■□ 3.28
PSPC1-204ENST00000492741 GRIN2AQ12879 1464 aa35.46■■■■□ 3.27
PSPC1-204ENST00000492741 RANGAP1P46060 587 aaPredicted RBP35.37■■■■□ 3.25
PSPC1-204ENST00000492741 CHD1O14646 1710 aa35.31■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms