RNA–Protein interactions for RNA: ENST00000362003.9

PCGF3-201, Transcript of polycomb group ring finger 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PCGF3, Length 5,685 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF3-201ENST00000362003 DCAF8L2P0C7V8 631 aa30.04■■■□□ 2.4
PCGF3-201ENST00000362003 NISCHQ9Y2I1 1504 aa29.36■■■□□ 2.29
PCGF3-201ENST00000362003 SUPT5HO00267 1087 aaKnown RBP28.45■■■□□ 2.14
PCGF3-201ENST00000362003 SHROOM4Q9ULL8 1493 aa28.12■■■□□ 2.09
PCGF3-201ENST00000362003 EHMT2Q96KQ7 1210 aa27.41■■□□□ 1.98
PCGF3-201ENST00000362003 APLP2Q06481 763 aa27.15■■□□□ 1.94
PCGF3-201ENST00000362003 FAM9AQ8IZU1 332 aaPredicted RBP26.88■■□□□ 1.89
PCGF3-201ENST00000362003 PELP1Q8IZL8 1130 aaKnown RBP26.77■■□□□ 1.88
PCGF3-201ENST00000362003 TTBK1Q5TCY1 1321 aaPredicted RBP26.49■■□□□ 1.83
PCGF3-201ENST00000362003 TRIM41Q8WV44 630 aa26.49■■□□□ 1.83
PCGF3-201ENST00000362003 PCGF6Q9BYE7 350 aa26.35■■□□□ 1.81
PCGF3-201ENST00000362003 RANGAP1P46060 587 aaPredicted RBP26.34■■□□□ 1.81
PCGF3-201ENST00000362003 ATP1B4Q9UN42 357 aaPredicted RBP26.19■■□□□ 1.78
PCGF3-201ENST00000362003 ZEB1P37275 1124 aaPredicted RBP26.17■■□□□ 1.78
PCGF3-201ENST00000362003 UBTFP17480 764 aaKnown RBP26.14■■□□□ 1.78
PCGF3-201ENST00000362003 CCER1Q8TC90 406 aaPredicted RBP26.05■■□□□ 1.76
PCGF3-201ENST00000362003 CENPBP07199 599 aaPredicted RBP25.89■■□□□ 1.73
PCGF3-201ENST00000362003 ERICH6Q7L0X2 663 aa25.57■■□□□ 1.68
PCGF3-201ENST00000362003 PPARGC1BQ86YN6 1023 aaKnown RBP25.48■■□□□ 1.67
PCGF3-201ENST00000362003 TRIM26Q12899 539 aaPredicted RBP25.47■■□□□ 1.67
PCGF3-201ENST00000362003 NEFLP07196 543 aa25.41■■□□□ 1.66
PCGF3-201ENST00000362003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.32■■□□□ 1.64
PCGF3-201ENST00000362003 HNRNPUL2Q1KMD3 747 aaKnown RBP25.32■■□□□ 1.64
PCGF3-201ENST00000362003 YTHDC1Q96MU7 727 aaKnown RBP25.3■■□□□ 1.64
PCGF3-201ENST00000362003 ABCC9O60706 1549 aa25.26■■□□□ 1.63
PCGF3-201ENST00000362003 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
PCGF3-201ENST00000362003 MYT1LQ9UL68 1186 aa25.24■■□□□ 1.63
PCGF3-201ENST00000362003 ITGAEP38570 1179 aa25.21■■□□□ 1.63
PCGF3-201ENST00000362003 LOC105371045A0A1W2PR82 267 aa25.14■■□□□ 1.61
PCGF3-201ENST00000362003 PABPN1Q86U42 306 aaKnown RBP eCLIP25.01■■□□□ 1.591e-6■■■■□ 24.2
PCGF3-201ENST00000362003 HRCP23327 699 aa24.97■■□□□ 1.59
PCGF3-201ENST00000362003 POLR3GLQ9BT43 218 aa24.96■■□□□ 1.59
PCGF3-201ENST00000362003 FAM50AQ14320 339 aaKnown RBP24.72■■□□□ 1.55
PCGF3-201ENST00000362003 DAXXQ9UER7 740 aaPredicted RBP24.63■■□□□ 1.53
PCGF3-201ENST00000362003 TRIM52Q96A61 297 aa24.57■■□□□ 1.52
PCGF3-201ENST00000362003 SLC4A1APQ9BWU0 796 aaKnown RBP24.57■■□□□ 1.52
PCGF3-201ENST00000362003 CNGB1Q14028 1251 aaPredicted RBP24.57■■□□□ 1.52
PCGF3-201ENST00000362003 MYT1Q01538 1121 aa24.55■■□□□ 1.52
PCGF3-201ENST00000362003 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
PCGF3-201ENST00000362003 DIEXFQ68CQ4 756 aaKnown RBP24.43■■□□□ 1.5
PCGF3-201ENST00000362003 FBLN2P98095 1184 aa24.4■■□□□ 1.5
PCGF3-201ENST00000362003 NEUROD1Q13562 356 aa24.38■■□□□ 1.49
PCGF3-201ENST00000362003 CCDC180Q9P1Z9 1646 aa24.34■■□□□ 1.49
PCGF3-201ENST00000362003 ZCCHC6Q5VYS8 1495 aaKnown RBP24.33■■□□□ 1.49
PCGF3-201ENST00000362003 CSRNP3Q8WYN3 585 aa24.23■■□□□ 1.47
PCGF3-201ENST00000362003 ZNF326Q5BKZ1 582 aaKnown RBP24.19■■□□□ 1.46
PCGF3-201ENST00000362003 CLSPNQ9HAW4 1339 aa24.15■■□□□ 1.46
PCGF3-201ENST00000362003 ANP32CO43423 234 aa24.15■■□□□ 1.46
PCGF3-201ENST00000362003 P3H3Q8IVL6 736 aa24.15■■□□□ 1.46
PCGF3-201ENST00000362003 ZNF316A6NFI3 1004 aaPredicted RBP24.1■■□□□ 1.45
PCGF3-201ENST00000362003 ARID3CA6NKF2 412 aa24.04■■□□□ 1.44
PCGF3-201ENST00000362003 CDK11AQ9UQ88 783 aaPredicted RBP24.03■■□□□ 1.44
PCGF3-201ENST00000362003 ZNF777Q9ULD5 760 aaPredicted RBP23.96■■□□□ 1.43
PCGF3-201ENST00000362003 RTL5Q5HYW3 569 aaPredicted RBP23.94■■□□□ 1.42
PCGF3-201ENST00000362003 RB1CC1Q8TDY2 1594 aa23.91■■□□□ 1.42
PCGF3-201ENST00000362003 BCANQ96GW7 911 aa23.88■■□□□ 1.41
PCGF3-201ENST00000362003 ZBTB47Q9UFB7 747 aaPredicted RBP23.85■■□□□ 1.41
PCGF3-201ENST00000362003 NEFMP07197 916 aa23.81■■□□□ 1.4
PCGF3-201ENST00000362003 CANXP27824 592 aaKnown RBP23.78■■□□□ 1.4
PCGF3-201ENST00000362003 DCAF1Q9Y4B6 1507 aa23.76■■□□□ 1.39
PCGF3-201ENST00000362003 GTF3C3Q9Y5Q9 886 aa23.72■■□□□ 1.39
PCGF3-201ENST00000362003 ESF1Q9H501 851 aaKnown RBP23.7■■□□□ 1.39
PCGF3-201ENST00000362003 TONSLQ96HA7 1378 aa23.7■■□□□ 1.39
PCGF3-201ENST00000362003 SLC24A1O60721 1099 aa23.68■■□□□ 1.38
PCGF3-201ENST00000362003 NPM1P06748 294 aaKnown RBP eCLIP23.67■■□□□ 1.38
PCGF3-201ENST00000362003 NACADO15069 1562 aa23.62■■□□□ 1.37
PCGF3-201ENST00000362003 STAG3Q9UJ98 1225 aa23.57■■□□□ 1.36
PCGF3-201ENST00000362003 CHGAP10645 457 aaKnown RBP23.55■■□□□ 1.36
PCGF3-201ENST00000362003 MTUS2Q5JR59 1369 aa23.49■■□□□ 1.35
PCGF3-201ENST00000362003 CHMP7Q8WUX9 453 aaPredicted RBP23.49■■□□□ 1.35
PCGF3-201ENST00000362003 CLIP1P30622 1438 aa23.47■■□□□ 1.35
PCGF3-201ENST00000362003 CHIC2Q9UKJ5 165 aa23.46■■□□□ 1.35
PCGF3-201ENST00000362003 EEA1Q15075 1411 aa23.46■■□□□ 1.35
PCGF3-201ENST00000362003 ACIN1Q9UKV3 1341 aaKnown RBP23.45■■□□□ 1.35
PCGF3-201ENST00000362003 BAZ1BQ9UIG0 1483 aaKnown RBP23.44■■□□□ 1.34
PCGF3-201ENST00000362003 RSF1Q96T23 1441 aaPredicted RBP23.43■■□□□ 1.34
PCGF3-201ENST00000362003 GOLGA3Q08378 1498 aa23.43■■□□□ 1.34
PCGF3-201ENST00000362003 BCL11AQ9H165 835 aa23.42■■□□□ 1.34
PCGF3-201ENST00000362003 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.41■■□□□ 1.342e-7■■■□□ 14.8
PCGF3-201ENST00000362003 TSPY4P0CV99 314 aa23.4■■□□□ 1.34
PCGF3-201ENST00000362003 TSPY10P0CW01 314 aa23.4■■□□□ 1.34
PCGF3-201ENST00000362003 ANP32AP39687 249 aaKnown RBP23.35■■□□□ 1.33
PCGF3-201ENST00000362003 PLPPR3Q6T4P5 718 aa23.32■■□□□ 1.32
PCGF3-201ENST00000362003 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.326e-6■■■■■ 35.2
PCGF3-201ENST00000362003 DDX10Q13206 875 aaKnown RBP23.31■■□□□ 1.32
PCGF3-201ENST00000362003 HNRNPUQ00839 825 aaKnown RBP eCLIP23.28■■□□□ 1.32
PCGF3-201ENST00000362003 FAM9BQ8IZU0 186 aa23.26■■□□□ 1.31
PCGF3-201ENST00000362003 CEP162Q5TB80 1403 aa23.26■■□□□ 1.31
PCGF3-201ENST00000362003 KIF27Q86VH2 1401 aa23.23■■□□□ 1.31
PCGF3-201ENST00000362003 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
PCGF3-201ENST00000362003 FKBP8Q14318 412 aa23.22■■□□□ 1.31
PCGF3-201ENST00000362003 KDM2AQ9Y2K7 1162 aa23.21■■□□□ 1.31
PCGF3-201ENST00000362003 TMC1Q8TDI8 760 aa23.2■■□□□ 1.3
PCGF3-201ENST00000362003 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
PCGF3-201ENST00000362003 WDR43Q15061 677 aaKnown RBP eCLIP23.18■■□□□ 1.3
PCGF3-201ENST00000362003 NPM2Q86SE8 214 aaKnown RBP23.18■■□□□ 1.3
PCGF3-201ENST00000362003 PLEKHD1A6NEE1 506 aa23.16■■□□□ 1.3
PCGF3-201ENST00000362003 RRP7BPQ9NSQ0 103 aa23.14■■□□□ 1.29
PCGF3-201ENST00000362003 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.14■■□□□ 1.29
PCGF3-201ENST00000362003 MYO15BQ96JP2 1530 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms