RNA–Protein interactions for RNA: ENST00000493298.1

TM4SF1-203, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 4

Gene TM4SF1, Length 702 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-203ENST00000493298 NISCHQ9Y2I1 1504 aa22.28■■□□□ 1.16
TM4SF1-203ENST00000493298 CCDC180Q9P1Z9 1646 aa19.95■□□□□ 0.78
TM4SF1-203ENST00000493298 ABCC9O60706 1549 aa19.55■□□□□ 0.72
TM4SF1-203ENST00000493298 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
TM4SF1-203ENST00000493298 NACADO15069 1562 aa18.71■□□□□ 0.59
TM4SF1-203ENST00000493298 MYO15BQ96JP2 1530 aa18.61■□□□□ 0.57
TM4SF1-203ENST00000493298 UNC13AQ9UPW8 1703 aa18.58■□□□□ 0.57
TM4SF1-203ENST00000493298 ZCCHC6Q5VYS8 1495 aaKnown RBP18.56■□□□□ 0.56
TM4SF1-203ENST00000493298 DCAF1Q9Y4B6 1507 aa18.46■□□□□ 0.55
TM4SF1-203ENST00000493298 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
TM4SF1-203ENST00000493298 DCAF8L2P0C7V8 631 aa18.35■□□□□ 0.53
TM4SF1-203ENST00000493298 DNAJC5BQ9UF47 199 aa18.2■□□□□ 0.5
TM4SF1-203ENST00000493298 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
TM4SF1-203ENST00000493298 SCRIBQ14160 1630 aa18.1■□□□□ 0.49
TM4SF1-203ENST00000493298 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
TM4SF1-203ENST00000493298 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
TM4SF1-203ENST00000493298 CC2D2AQ9P2K1 1620 aa17.76■□□□□ 0.43
TM4SF1-203ENST00000493298 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
TM4SF1-203ENST00000493298 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
TM4SF1-203ENST00000493298 NCAPD3P42695 1498 aa17.28■□□□□ 0.36
TM4SF1-203ENST00000493298 ATAD2BQ9ULI0 1458 aa17.26■□□□□ 0.35
TM4SF1-203ENST00000493298 PEG3Q9GZU2 1588 aa17.24■□□□□ 0.35
TM4SF1-203ENST00000493298 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
TM4SF1-203ENST00000493298 HMGXB3Q12766 1538 aa17.21■□□□□ 0.34
TM4SF1-203ENST00000493298 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
TM4SF1-203ENST00000493298 MROH2BQ7Z745 1585 aa17.19■□□□□ 0.34
TM4SF1-203ENST00000493298 BAZ1BQ9UIG0 1483 aaKnown RBP17.03■□□□□ 0.32
TM4SF1-203ENST00000493298 WIZO95785 1651 aa17.02■□□□□ 0.32
TM4SF1-203ENST00000493298 NESP48681 1621 aa16.94■□□□□ 0.3
TM4SF1-203ENST00000493298 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
TM4SF1-203ENST00000493298 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
TM4SF1-203ENST00000493298 KIF21AQ7Z4S6 1674 aa16.81■□□□□ 0.28
TM4SF1-203ENST00000493298 THOC2Q8NI27 1593 aaKnown RBP16.8■□□□□ 0.28
TM4SF1-203ENST00000493298 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.28
TM4SF1-203ENST00000493298 CUX2O14529 1486 aa16.75■□□□□ 0.27
TM4SF1-203ENST00000493298 ERCC6Q03468 1493 aa16.75■□□□□ 0.27
TM4SF1-203ENST00000493298 CADPSQ9ULU8 1353 aa16.7■□□□□ 0.26
TM4SF1-203ENST00000493298 CFTRP13569 1480 aa16.63■□□□□ 0.25
TM4SF1-203ENST00000493298 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
TM4SF1-203ENST00000493298 PDS5BQ9NTI5 1447 aa16.62■□□□□ 0.25
TM4SF1-203ENST00000493298 WDR62O43379 1518 aa16.57■□□□□ 0.24
TM4SF1-203ENST00000493298 CCDC88BA6NC98 1476 aa16.56■□□□□ 0.24
TM4SF1-203ENST00000493298 MRC2Q9UBG0 1479 aa16.53■□□□□ 0.24
TM4SF1-203ENST00000493298 FANCD2Q9BXW9 1451 aa16.52■□□□□ 0.23
TM4SF1-203ENST00000493298 CEP164Q9UPV0 1460 aa16.49■□□□□ 0.23
TM4SF1-203ENST00000493298 URB2Q14146 1524 aaKnown RBP16.45■□□□□ 0.22
TM4SF1-203ENST00000493298 DNAJC5Q9H3Z4 198 aa16.42■□□□□ 0.22
TM4SF1-203ENST00000493298 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
TM4SF1-203ENST00000493298 TOPBP1Q92547 1522 aa16.28■□□□□ 0.2
TM4SF1-203ENST00000493298 DNMBPQ6XZF7 1577 aa16.26■□□□□ 0.19
TM4SF1-203ENST00000493298 TARBP1Q13395 1621 aaKnown RBP16.22■□□□□ 0.19
TM4SF1-203ENST00000493298 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
TM4SF1-203ENST00000493298 ABCC8Q09428 1581 aa16.17■□□□□ 0.18
TM4SF1-203ENST00000493298 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
TM4SF1-203ENST00000493298 CUX1P39880 1505 aa16.14■□□□□ 0.18
TM4SF1-203ENST00000493298 POLA1P09884 1462 aaPredicted RBP16.14■□□□□ 0.17
TM4SF1-203ENST00000493298 EIF4G3O43432 1585 aaKnown RBP16.13■□□□□ 0.17
TM4SF1-203ENST00000493298 WDR97A6NE52 1622 aa16.09■□□□□ 0.17
TM4SF1-203ENST00000493298 FGD5Q6ZNL6 1462 aa16.04■□□□□ 0.16
TM4SF1-203ENST00000493298 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
TM4SF1-203ENST00000493298 CHD1O14646 1710 aa16.01■□□□□ 0.15
TM4SF1-203ENST00000493298 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.159e-7■■■■■ 30.6
TM4SF1-203ENST00000493298 BIVM-ERCC5R4GMW8 1640 aa15.99■□□□□ 0.15
TM4SF1-203ENST00000493298 SOGA1O94964 1423 aa15.96■□□□□ 0.15
TM4SF1-203ENST00000493298 SYNJ1O43426 1573 aa15.96■□□□□ 0.14
TM4SF1-203ENST00000493298 TOP2BQ02880 1626 aa15.94■□□□□ 0.14
TM4SF1-203ENST00000493298 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
TM4SF1-203ENST00000493298 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
TM4SF1-203ENST00000493298 TDRD9Q8NDG6 1382 aaKnown RBP15.91■□□□□ 0.14
TM4SF1-203ENST00000493298 ABCA10Q8WWZ4 1543 aa15.9■□□□□ 0.14
TM4SF1-203ENST00000493298 OSCARQ8IYS5 282 aa15.9■□□□□ 0.14
TM4SF1-203ENST00000493298 RIMBP3CA6NJZ7 1639 aa15.87■□□□□ 0.13
TM4SF1-203ENST00000493298 RIMBP3BA6NNM3 1639 aa15.87■□□□□ 0.13
TM4SF1-203ENST00000493298 RIMBP3Q9UFD9 1639 aa15.87■□□□□ 0.13
TM4SF1-203ENST00000493298 SNAPC4Q5SXM2 1469 aa15.85■□□□□ 0.13
TM4SF1-203ENST00000493298 WRNQ14191 1432 aaPredicted RBP eCLIP15.85■□□□□ 0.13
TM4SF1-203ENST00000493298 GRIN2BQ13224 1484 aa15.83■□□□□ 0.12
TM4SF1-203ENST00000493298 MAGI1Q96QZ7 1491 aaPredicted RBP15.83■□□□□ 0.12
TM4SF1-203ENST00000493298 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
TM4SF1-203ENST00000493298 ARHGEF11O15085 1522 aa15.81■□□□□ 0.12
TM4SF1-203ENST00000493298 GAPVD1Q14C86 1478 aa15.81■□□□□ 0.12
TM4SF1-203ENST00000493298 SYNJ2O15056 1496 aa15.78■□□□□ 0.12
TM4SF1-203ENST00000493298 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
TM4SF1-203ENST00000493298 ERICH3Q5RHP9 1530 aa15.7■□□□□ 0.1
TM4SF1-203ENST00000493298 ARAP1Q96P48 1450 aa15.69■□□□□ 0.1
TM4SF1-203ENST00000493298 CEP170Q5SW79 1584 aa15.67■□□□□ 0.1
TM4SF1-203ENST00000493298 GRIN2AQ12879 1464 aa15.66■□□□□ 0.1
TM4SF1-203ENST00000493298 NUP160Q12769 1436 aa15.65■□□□□ 0.1
TM4SF1-203ENST00000493298 FBLN2P98095 1184 aa15.64■□□□□ 0.09
TM4SF1-203ENST00000493298 CHIC1Q5VXU3 224 aa15.64■□□□□ 0.09
TM4SF1-203ENST00000493298 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
TM4SF1-203ENST00000493298 SHROOM2Q13796 1616 aa15.64■□□□□ 0.09
TM4SF1-203ENST00000493298 CHMP7Q8WUX9 453 aaPredicted RBP15.61■□□□□ 0.09
TM4SF1-203ENST00000493298 ERCC6L2Q5T890 1561 aa15.61■□□□□ 0.09
TM4SF1-203ENST00000493298 FHAD1B1AJZ9 1412 aa15.6■□□□□ 0.09
TM4SF1-203ENST00000493298 RUSC2Q8N2Y8 1516 aa15.55■□□□□ 0.08
TM4SF1-203ENST00000493298 IGF1RP08069 1367 aa15.53■□□□□ 0.08
TM4SF1-203ENST00000493298 CUL7Q14999 1698 aa15.53■□□□□ 0.08
TM4SF1-203ENST00000493298 CYB5RLQ6IPT4 315 aa15.5■□□□□ 0.07
TM4SF1-203ENST00000493298 KIF27Q86VH2 1401 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms